Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L04
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0591 - 24159654-24160155,24160233-24160316,24160898-241609...    28   2.0  
02_05_1338 + 35790726-35791862                                         27   2.7  
09_03_0172 - 13072575-13073800,13075919-13076054                       27   3.6  
01_01_0647 - 4909311-4909412,4909538-4909610,4909930-4910047,491...    27   3.6  
09_01_0142 - 2103224-2103864,2104264-2104399                           27   4.7  
05_01_0126 + 858259-858489,858641-859189,859545-860162                 26   6.2  

>02_04_0591 -
           24159654-24160155,24160233-24160316,24160898-24160944,
           24161035-24161103,24161259-24161310,24161693-24161775,
           24162312-24162422,24162808-24163211,24163308-24163380,
           24163460-24163510,24163882-24164073,24164176-24164302,
           24164753-24164934,24165023-24165226,24165738-24165836
          Length = 759

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 112 LKRQLEADTLSLDSRESVEVGVQCIETAFDLTPEDATLALDLTQFVRSSRGINPLDSGRG 291
           +K  ++AD    D  +  ++  + I    +L  E A L  D+TQ      G  P+D+G  
Sbjct: 255 VKEDMDADPSGKDVVDDGKLSERTISD--ELPQEPAKLEQDVTQTTAIGSGATPVDNGTE 312

Query: 292 EALKN 306
            A  N
Sbjct: 313 SAAAN 317


>02_05_1338 + 35790726-35791862
          Length = 378

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -1

Query: 287 RPLSSGLIPRDDRTNC--VRSNASVASSGVRSKAVSIHCT 174
           RP  +  + RD   NC  V + A++ +  V+S AVSIH T
Sbjct: 108 RPTLADRLSRDPLRNCAGVAAIAALRALDVKSHAVSIHLT 147


>09_03_0172 - 13072575-13073800,13075919-13076054
          Length = 453

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 175 VQCIETAFDLTPEDATLALDLTQFVR-SSRGINPLDSGRG-EALKNDGNEL 321
           V+CI     LT ED  L  +   FVR + +G+   D  RG   + N G +L
Sbjct: 390 VECIGFGSSLTAEDVGLKRNCIYFVRPNDKGLYVYDMERGTTVMHNPGADL 440


>01_01_0647 -
           4909311-4909412,4909538-4909610,4909930-4910047,
           4910133-4910229,4910350-4910445,4910536-4910631,
           4910725-4910871,4911877-4911987,4912582-4912620
          Length = 292

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 316 RCRHFSELRHARYLA 272
           RC+HFSE R A Y+A
Sbjct: 120 RCKHFSERRSATYIA 134


>09_01_0142 - 2103224-2103864,2104264-2104399
          Length = 258

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 136 CRLPAAALETQRYSQR*SSLHSTCR 62
           C LP AA   +RYSQ  S+ H T R
Sbjct: 102 CPLPRAAKAVRRYSQVTSTAHDTNR 126


>05_01_0126 + 858259-858489,858641-859189,859545-860162
          Length = 465

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 119 GSWKPTHSVLTRARVSRSACNVSRPPS-ILHPKMLRSHWT*RSSYG 253
           GSW+ T     RA  + S  +VSRP S ++      SH   RSS G
Sbjct: 243 GSWRTTVHTGGRATATASHEHVSRPISGVIRSSSSSSHSRSRSSEG 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,339,624
Number of Sequences: 37544
Number of extensions: 116443
Number of successful extensions: 340
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)