Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L04
         (329 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   2.3  
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    23   3.9  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          22   5.2  
DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.           21   9.1  
AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translati...    21   9.1  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = -2

Query: 328 PSSARCRHFSELRHA--RYLA 272
           PSS R RH   +RHA  RY A
Sbjct: 218 PSSPRMRHQGRIRHADRRYKA 238


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 251 RTNCVRSNASVASSGVRSKAVSIHCTPTST 162
           RTN   + A  A    +S  VS    PT T
Sbjct: 224 RTNAANATAGAAHYSKKSTTVSYQPVPTGT 253


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 126 GSRHTQS*LARECRGRRAMYRDRLRS 203
           G  HT S +    R  R   RDR+RS
Sbjct: 570 GMNHTNSFVVEHSRRDRDRDRDRMRS 595


>DQ314781-1|ABC54566.1|  407|Anopheles gambiae OSKAR protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 153 ARECRGRRAMYRDRLRSYTRR 215
           AR  R RRA   +R   YTRR
Sbjct: 166 ARPYRVRRAPRAERRHPYTRR 186


>AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translation
           initiation factor protein.
          Length = 348

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +1

Query: 37  HRGI-FLVSFDMSN-EVKIIAASIVAFLKRQLEADTLSLDSRESVEVGVQCIETAFDLTP 210
           H G+ F V+   ++ +V I   S +   +R  E +   +  +     G+ C   AFD+TP
Sbjct: 264 HHGVPFYVAAPFTSIDVAIEDGSHIKIEERP-EHELTHIGGQRIAAPGIGCWNPAFDVTP 322

Query: 211 ED 216
            +
Sbjct: 323 AE 324


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 280,262
Number of Sequences: 2352
Number of extensions: 4605
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 22910151
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)