Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L04
         (329 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41533-7|AAA83170.1|  337|Caenorhabditis elegans Small glutamine...    39   7e-04
Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical pr...    26   5.5  
AC025716-22|AAK39613.1|  630|Caenorhabditis elegans Zwilch (dros...    25   9.7  

>U41533-7|AAA83170.1|  337|Caenorhabditis elegans Small
           glutamine-rich tetratricorepeat protein protein 1
           protein.
          Length = 337

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
 Frame = +1

Query: 88  IAASIVAFLKRQLEADTLSLDSRESVEVGVQCIETAFDLTPEDATLALD----LTQFVRS 255
           +  S + F+++++  +  + +  E++EV +QC+E +F L  +DA+ A      + +  +S
Sbjct: 26  LVVSFLQFIRQKVSQNQATAEQAEALEVAIQCLEHSFGL--DDASYAFQPSRPILELFKS 83

Query: 256 SRGI--------NPLDSGRGEA--LKNDGNELMK 327
           + G+         P DS   +A  LK +GN+LMK
Sbjct: 84  AEGLPEGESALPTPSDSDISQANKLKEEGNDLMK 117


>Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical protein
            B0024.6 protein.
          Length = 1161

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 61   FDMSNEVKIIAASIVAFLKRQ-LEADTLSLDSRESVEVGVQCIETAFDLTPEDATLALDL 237
            FD+ N  K  A  I+  LK+  L++   SL+  ES+E+    +    D   E  +   D+
Sbjct: 811  FDLENR-KEDAEEIIYMLKKGGLQSPRPSLEHDESIEINPALLHLVRDCWTERPSERPDI 869

Query: 238  TQFVRSSRGIN 270
             Q     R +N
Sbjct: 870  KQVASQLRSMN 880


>AC025716-22|AAK39613.1|  630|Caenorhabditis elegans Zwilch
           (drosophila) homolog protein1 protein.
          Length = 630

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 308 SFFRASPRPLSSGL-IPRDDRTNC 240
           SFF A+P PLS G+ + R  R NC
Sbjct: 137 SFFDANPIPLSDGVSLQRYIRLNC 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,238,626
Number of Sequences: 27780
Number of extensions: 97588
Number of successful extensions: 307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)