Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L04
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.55 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   0.96 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.96 
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   2.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   2.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   2.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   5.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    20   6.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    20   6.7  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    20   8.9  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 0.55
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 84  DYRCEYRCVSKAAAGSRHTQS*LARECRG 170
           D R +Y+ + K + GS H Q  + R C G
Sbjct: 368 DSRPQYQ-IDKRSMGSHHGQRVMVRTCNG 395


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 0.96
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = +1

Query: 37  HRGIFLVSFDMSNEVKIIAASIVAFLKRQLEADTLSLDSRESVEVGVQCIETAFDLTPED 216
           H G FL+       + ++ + +  +L R+  AD +SL     + +    +E   DL    
Sbjct: 212 HMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGLEARTDLPKVP 271

Query: 217 ATLALDLTQFV 249
              ALD   F+
Sbjct: 272 YPTALDFFVFL 282


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 0.96
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 5/27 (18%)
 Frame = +3

Query: 78  SEDYRCE-----YRCVSKAAAGSRHTQ 143
           +EDYR E     Y C++++ AGS H++
Sbjct: 67  AEDYRQEVHAQVYSCLARSPAGSVHSR 93


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 111 SKAAAGSRHTQS*LARECRGRRAMYRDRLRSYTR 212
           S + A      S L ++C G  A   DR+R  T+
Sbjct: 531 SGSCAPGAPLDSKLCQQCVGNLASNNDRIRQVTK 564


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 111 SKAAAGSRHTQS*LARECRGRRAMYRDRLRSYTR 212
           S + A      S L ++C G  A   DR+R  T+
Sbjct: 531 SGSCAPGAPLDSKLCQQCVGNLASNNDRIRQVTK 564


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 111 SKAAAGSRHTQS*LARECRGRRAMYRDRLRSYTR 212
           S + A      S L ++C G  A   DR+R  T+
Sbjct: 531 SGSCAPGAPLDSKLCQQCVGNLASNNDRIRQVTK 564


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 12/66 (18%), Positives = 29/66 (43%)
 Frame = +1

Query: 37  HRGIFLVSFDMSNEVKIIAASIVAFLKRQLEADTLSLDSRESVEVGVQCIETAFDLTPED 216
           H G FL+   +   + ++ + +  ++ R+  +D + L     + +    +++  DL    
Sbjct: 243 HTGYFLIQVYVPCVLIVVLSWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVR 302

Query: 217 ATLALD 234
              ALD
Sbjct: 303 YATALD 308


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 90  RCEYRCVSKAAAGSRHTQS 146
           +C Y CV+K+   S H +S
Sbjct: 21  KCSYSCVNKSMLNS-HLKS 38


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 43  GIFLVSFDMSNEVKIIAASIVA 108
           G+  V  D + +V+IIA +IVA
Sbjct: 519 GLDYVGEDDNMQVRIIAGAIVA 540


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 63 RHVE*SEDYRC 95
          +H E  E+YRC
Sbjct: 28 KHAERQEEYRC 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,319
Number of Sequences: 438
Number of extensions: 1168
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)