Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L03
         (210 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   1.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   1.4  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    20   3.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   3.1  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    19   7.2  

>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 181 LRNQRFCKKGNLKPAKQLL 125
           L+N R CKK   K   Q+L
Sbjct: 31  LKNFRLCKKHKTKKPVQIL 49


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 181 LRNQRFCKKGNLKPAKQLL 125
           L+N R CKK   K   Q+L
Sbjct: 31  LKNFRLCKKHKTKKPVQIL 49



 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 123 LNNCLAGLRLPFLQNLWF 176
           L+ CL  L + F+  L+F
Sbjct: 312 LSGCLCELYMAFMDRLYF 329


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 140 GFKVTFFTEPL 172
           GF+V + TEP+
Sbjct: 504 GFEVVYMTEPI 514


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 109 SSRPLLITAWRV 144
           S RP LI  W+V
Sbjct: 466 SERPALIEGWKV 477


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +3

Query: 105 AFLSAALNNCLAGLRLPFLQNLWFLRN 185
           ++LS   +     L +PF  + W+L++
Sbjct: 231 SWLSGGASASKVTLSVPFYGHSWYLQS 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,057
Number of Sequences: 336
Number of extensions: 433
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 45
effective length of database: 107,465
effective search space used:  2579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)