Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L03
         (210 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   1.4  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    23   4.2  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    23   5.5  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    23   5.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    23   7.3  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    23   7.3  

>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 111 LSAALNNCLAGLRLPFLQNLWFL 179
           LS  +N+ +   ++PFLQ LW+L
Sbjct: 618 LSHGINHGILLRKVPFLQYLWYL 640


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 137  GGFKVTFFTEPLVPQEFRIHAKCG 208
            GGF  + F   + PQE+  H   G
Sbjct: 992  GGFIASRFLTGIAPQEYYFHCMAG 1015


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 146  KVTFFTEPLVPQEFRIHAKC 205
            K++ F  P +PQ  R  AKC
Sbjct: 2316 KISTFLRPFLPQLQRTFAKC 2335


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 135 LAGLRLPFLQNLWFLRNLG 191
           L   R+PF + +WF+R  G
Sbjct: 168 LVKFRVPFTRAIWFIRCAG 186


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 140 GFKVTFFTEPLVPQEFRIHAKCG 208
           GF    +   L PQEF  HA  G
Sbjct: 804 GFIENSYLRGLTPQEFFFHAMAG 826


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 192 ILNS*GTRGSVKKVTLNPPSS 130
           +LNS G+  S+KK    PPSS
Sbjct: 134 MLNSLGSSLSLKKSVSRPPSS 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,300
Number of Sequences: 5004
Number of extensions: 7312
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)