Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L03
         (210 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       38   0.001
11_04_0234 + 15187065-15188241,15188316-15188494                       29   0.51 
11_06_0128 - 20389375-20389781,20389988-20392787                       26   4.8  
08_02_1358 - 26372559-26372887,26373183-26373262,26373287-263734...    26   4.8  
02_01_0254 - 1669461-1669590,1669833-1672318                           25   6.3  
07_01_1173 + 11092482-11093465,11093552-11093914                       25   8.4  
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159...    25   8.4  

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = -3

Query: 208 STLGMDPKFLRNQRFCKKGNLK 143
           ST GMDPKFLRNQR+ +K N K
Sbjct: 31  STKGMDPKFLRNQRYSRKHNKK 52


>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 78  HFLALASRVAFLSAALNNCLAGLRLPFLQNLWFLRN 185
           HF A    +++L A L  C   + +P     WFLRN
Sbjct: 257 HFSASYGVISWLDAGLPPCKLVMGIPLFGRSWFLRN 292


>11_06_0128 - 20389375-20389781,20389988-20392787
          Length = 1068

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +3

Query: 99  RVAFLSAALNNCLAGLRLPFLQNLWFLRNL 188
           RVA L  A  N L+G   PFL NL FLR L
Sbjct: 89  RVAALRMASFN-LSGAISPFLANLSFLREL 117


>08_02_1358 -
           26372559-26372887,26373183-26373262,26373287-26373420,
           26373546-26373689,26373809-26373919,26374165-26374305,
           26376839-26376964,26377072-26377263
          Length = 418

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 195 WILNS*GTRGSVKKVTLNPPS 133
           WI N+ GTR S + V+L+P S
Sbjct: 132 WIANNRGTRWSSRHVSLDPKS 152


>02_01_0254 - 1669461-1669590,1669833-1672318
          Length = 871

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 78  HFLALASRVAFLSAALNNCLAGLRLPFLQNLWFLRNLGSMPS 203
           H L+L      L A L++  + LRLP   +L   R+L ++PS
Sbjct: 68  HLLSLPDPAPHLLALLSSSSSPLRLPLGFSLSAFRSLCALPS 109


>07_01_1173 + 11092482-11093465,11093552-11093914
          Length = 448

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 60  SYKLRVHFLALASRVAFLSAALNNCLAGLR 149
           S  LR+H   L SR  +LSAA++  LA  R
Sbjct: 58  SAPLRLHDSDLPSRSQYLSAAISGILASHR 87


>02_05_1041 -
           33713561-33714564,33714844-33714904,33715640-33715951,
           33716780-33716917
          Length = 504

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 164 EPLVPQEFRIHAKC 205
           EPL PQEF + +KC
Sbjct: 101 EPLEPQEFSVGSKC 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,076,526
Number of Sequences: 37544
Number of extensions: 47309
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 14,793,348
effective HSP length: 49
effective length of database: 12,953,692
effective search space used: 259073840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)