Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L01
(221 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 26 0.77
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 1.4
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 1.8
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 24 3.1
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 23 4.1
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 23 5.5
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 23 5.5
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 23 5.5
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 23 5.5
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo... 23 5.5
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 23 5.5
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 23 5.5
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 23 7.2
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 22 9.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 22 9.5
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 0.77
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 59 EIAYSLADDGPQPVSRTYQYRKVM 130
E+ +LA+D P+ VS+ Y+Y V+
Sbjct: 665 ELDLALAEDAPEFVSKVYRYLHVL 688
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.0 bits (52), Expect = 1.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 95 PVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 199
P +R + R K + ERKRR I D+LK+ +
Sbjct: 328 PYTRNPELRTSHK-LAERKRRKEIKELFDDLKDAL 361
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 71 SLADDGPQPVSRTYQYRKVMKPMLERKRRA 160
S+A P P+S ++ ++ PM R+ A
Sbjct: 467 SMAPPSPSPISPSFPLHEIQSPMPNRRMAA 496
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 23.8 bits (49), Expect = 3.1
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 198 ISSLSSSKQRLMR-ARLLRSSIGFITLRY**VRETGCGPSSASEYAIS*DIVDIVC 34
+ L +Q +++ R +R ++ R + TGCGP SAS+ +S ++ C
Sbjct: 82 LDGLDKKEQNMLKYLRQVRDALYSEEFRSHVQKITGCGPLSASKKDLSVNVYSKGC 137
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 56 YEIAYSLADDGPQPVSRTYQYRKVMKPMLERK 151
+ I Y+L + GP P S T + + K + E K
Sbjct: 123 FGIKYNLGNGGPAPESVTEKIYSITKTISEYK 154
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 2 HEAAQTYTFTEHTMSTMSYEIAYSLADDGPQPVSRTY 112
HE T+ F E+ +T+ E ++ D + ++TY
Sbjct: 715 HEGYDTFHFVENPKATIDIESFWTPVDVVEEKSAKTY 751
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 110 YQYRKVMKPMLERKRRARINRCLDELKELMVSA 208
Y R + +ER + +N LDE +E+ S+
Sbjct: 402 YSNRLCIWDRIERSKTGEMNNVLDEKEEISASS 434
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 23.0 bits (47), Expect = 5.5
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = +2
Query: 74 LADDGPQPVSRTYQYR 121
L D GP+P + +YQ++
Sbjct: 550 LIDSGPKPANNSYQHQ 565
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 151 LTLEHRLHHFAILISARDGLRAVVRERIRDLVRH 50
L + HR + ++++ R V+R RI +RH
Sbjct: 227 LEIRHRQRYLDLIMNRSTRDRFVMRSRIIQYIRH 260
>SPAC7D4.06c |alg3||dolichol-P-Man dependent
alpha|Schizosaccharomyces pombe|chr 1|||Manual
Length = 406
Score = 23.0 bits (47), Expect = 5.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 193 LFKFVQATVDAGAPLTLEHRLHHFAILISARDGLRAV 83
LFK V+A L L RLH IL DG ++
Sbjct: 123 LFKIVRAPFYIYVLLILSKRLHSIFILRLFNDGFNSL 159
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 23.0 bits (47), Expect = 5.5
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -2
Query: 157 APLTLEHRLHHFAILISARDGLRAVVRERIRDLVRHCRH-CVFSKS 23
+PL++E L DGL +RE + L R H CV +S
Sbjct: 28 SPLSVEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCES 73
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 11 AQTYTFTEHTMSTMSYEIAYSLADDGPQPVSRTYQYRKVMK 133
A+T HT+S + + L D+ + T +YR V K
Sbjct: 735 AETEIAYHHTLSASNSYVFTDLVDNPDSMLKSTLKYRFVFK 775
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 89 PQPVSRTYQYRKVMKPMLERKRRARINRCLDELKEL 196
P+PV QY ++++ K +I R ++ +K L
Sbjct: 860 PEPVIPGTQYEELLEAEKIEKEEEKIERVVEVMKTL 895
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 122 KVMKPMLERKRRARINR 172
++ KPML + R+ INR
Sbjct: 136 QIAKPMLSSRERSSINR 152
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/29 (24%), Positives = 17/29 (58%)
Frame = -2
Query: 118 ILISARDGLRAVVRERIRDLVRHCRHCVF 32
+L + ++++ + +RDL+R C +F
Sbjct: 3757 VLENRNQDFKSLIMDALRDLIRRCFLYIF 3785
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,456
Number of Sequences: 5004
Number of extensions: 10859
Number of successful extensions: 43
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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