Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_L01
(221 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0432 + 17510820-17510996,17511076-17511546 29 0.38
01_06_0928 + 33085403-33089224 27 1.5
11_06_0503 - 24374657-24375211 27 2.0
04_04_1170 + 31449978-31450135,31451625-31451661,31452158-314522... 27 2.7
05_03_0369 - 13136146-13136175,13136237-13136908,13136926-131370... 26 3.6
04_03_0971 - 21340829-21340996,21341169-21341222,21341317-213415... 26 3.6
01_03_0028 - 11783122-11783381,11783668-11784163 26 3.6
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 26 4.7
10_06_0170 + 11431540-11432259,11434552-11434644,11434739-114348... 25 6.2
03_04_0056 + 16898169-16898181,16898683-16898758,16898871-168989... 25 6.2
07_03_1420 + 26448009-26448085,26448302-26448394,26448634-264487... 25 8.3
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 25 8.3
>09_04_0432 + 17510820-17510996,17511076-17511546
Length = 215
Score = 29.5 bits (63), Expect = 0.38
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 143 ERKRRARINRCLDELKELMVSALRSE 220
ERKRR RIN LD L+ L+ SA R +
Sbjct: 36 ERKRRERINAHLDTLRGLVPSASRMD 61
>01_06_0928 + 33085403-33089224
Length = 1273
Score = 27.5 bits (58), Expect = 1.5
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Frame = +2
Query: 29 TEHTMSTMSYEIAYSLADDGPQPVSRTYQYRKVMKPM---------LERKRRARINRCLD 181
TE + + Y+I +A+ G Q V KP+ L K R I++ L+
Sbjct: 46 TEDVLDELEYDILKRVAEKGAQASLMVASSNSVPKPLHAASNKMSNLRPKNRKLISK-LE 104
Query: 182 ELKELMVSA 208
ELKE++V A
Sbjct: 105 ELKEILVEA 113
>11_06_0503 - 24374657-24375211
Length = 184
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 77 ADDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 199
+D+G PV + +K K + R +A+IN C+ +E M
Sbjct: 43 SDEGKAPVMEKKKKKKKAKTKMVRFTQAQINNCITYKEEEM 83
>04_04_1170 +
31449978-31450135,31451625-31451661,31452158-31452273,
31452389-31452419,31452597-31452662,31452753-31452818,
31452969-31453223,31453598-31453687
Length = 272
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 92 QPVSRTYQYRKVMKPMLERKRRA-RINRCLDELKELMVSALRSE 220
Q +T + R V+ ++ RKRR RIN L L+EL+ + +++
Sbjct: 95 QEEEQTPKLRSVIAHLVSRKRRRDRINEKLKALQELLPNCTKTD 138
>05_03_0369 - 13136146-13136175,13136237-13136908,13136926-13137016,
13137184-13137416,13137459-13137731,13137877-13138265,
13138325-13139156,13139847-13139922,13140027-13140414,
13141395-13141748,13142069-13142333,13143366-13143716
Length = 1317
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 135 RCSSVRGAPASTVAWTNLKS*WLAHC 212
+C ++ P ST T+LKS W+ C
Sbjct: 1213 KCLKLKSLPESTKHLTSLKSLWMVGC 1238
>04_03_0971 -
21340829-21340996,21341169-21341222,21341317-21341540,
21341936-21342239,21342341-21342439,21343177-21343314,
21343412-21343534,21343623-21343721
Length = 402
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -2
Query: 118 ILISARDGLRAVVRERIRDLVRHCRHCVFSKSVRLRC 8
+++SAR +R D HC CV +VR RC
Sbjct: 27 LVVSARKVGETCAADRNCDAGLHCETCVADGNVRPRC 63
>01_03_0028 - 11783122-11783381,11783668-11784163
Length = 251
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = +2
Query: 74 LADDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALR 214
L DD PQP R + K+++ + RR I RC L E+ +ALR
Sbjct: 39 LPDDPPQPPLRERR-PKIIR--IINDRRNNIRRCYKGLLEMADAALR 82
>05_03_0076 +
8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 121 AILISARDGLRAVVRERIRDLVRHCRHCVFSKSVRLR 11
AI ++ RD +AV RER + +R C H + + R R
Sbjct: 192 AIWVALRDPKQAV-RERAVEALRACLHVIEKRETRWR 227
>10_06_0170 +
11431540-11432259,11434552-11434644,11434739-11434806,
11434873-11435011,11435179-11435229,11435600-11435675,
11436216-11436274
Length = 401
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -2
Query: 151 LTLEHRLHHFAILISARDGLRAVVRERIRDLVRHCRHCVFSKSVRLR 11
L L+ L + L+ ++ A+ RE+ +L R ++C+ SV+ R
Sbjct: 290 LRLKRHLGDTSELVIVKNAGHAINREKPAELCRLIKNCIADPSVKYR 336
>03_04_0056 +
16898169-16898181,16898683-16898758,16898871-16898916,
16899013-16899127,16899217-16899296,16899373-16899966,
16900059-16900163,16900569-16900907
Length = 455
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 38 TMSTMSYEIAYSLAD-DGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVS 205
T++ M Y + + D +GP+ Y P+ R R+ +CL+ E VS
Sbjct: 286 TLTDMQYVVFHGSVDSEGPEAYQEYYIRHIDGSPVNSEAERQRVIQCLEAAIERRVS 342
>07_03_1420 +
26448009-26448085,26448302-26448394,26448634-26448727,
26448822-26448859,26448999-26449090,26449179-26449258,
26449332-26449388,26449420-26449449,26449505-26449597,
26449766-26449840,26449888-26449959
Length = 266
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 143 ERKRRARINRCLDELKELMVSALRS 217
E+K A +N+ L++ K+LM+ L S
Sbjct: 70 EKKNSADVNKQLNDKKQLMIKELNS 94
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 32 EHTMSTMSYEIAYSLADDGPQPVSRTYQYRKVMKPMLERKR 154
EH +T+ EI YSL D Q + YQ R + +++ +R
Sbjct: 304 EHEETTIMAEIDYSLIDQRRQFLPLQYQRRGDLYQLVDVQR 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,242,469
Number of Sequences: 37544
Number of extensions: 79999
Number of successful extensions: 352
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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