Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L01
         (221 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF020555-1|AAB68848.1|  173|Caenorhabditis elegans lin-22 protein.     37   0.002
AC024817-57|AAK68522.1|  173|Caenorhabditis elegans Abnormal cel...    37   0.002
U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homo...    26   3.1  
U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protei...    26   3.1  
Z93389-2|CAB07671.2|  355|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z35639-5|CAA84699.2|  534|Caenorhabditis elegans Hypothetical pr...    25   5.5  
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    25   5.5  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    25   5.5  
Z82054-3|CAB04841.2|  269|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U80815-10|AAO91678.1|  437|Caenorhabditis elegans Hypothetical p...    25   9.6  
U80815-9|AAV34785.1|  361|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U80815-8|AAB37997.1|  498|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U80815-7|AAO91677.1|  473|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U80815-6|AAO91675.1|  464|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U80815-5|AAO91676.1|  439|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U80815-4|AAO91674.1|  524|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U80815-3|AAK73899.1|  499|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>AF020555-1|AAB68848.1|  173|Caenorhabditis elegans lin-22 protein.
          Length = 173

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 13/24 (54%), Positives = 22/24 (91%)
 Frame = +2

Query: 131 KPMLERKRRARINRCLDELKELMV 202
           KP++E+KRRARIN+ L +LK++++
Sbjct: 26  KPLMEKKRRARINKSLSQLKQILI 49


>AC024817-57|AAK68522.1|  173|Caenorhabditis elegans Abnormal cell
           lineage protein 22 protein.
          Length = 173

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 13/24 (54%), Positives = 22/24 (91%)
 Frame = +2

Query: 131 KPMLERKRRARINRCLDELKELMV 202
           KP++E+KRRARIN+ L +LK++++
Sbjct: 26  KPLMEKKRRARINKSLSQLKQILI 49


>U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical
           protein F07E5.5 protein.
          Length = 384

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +2

Query: 77  ADDGPQPVSRTYQYRKVMK-PMLERKRRA 160
           A+DG +P+S+T Q RK+ K   +ERK RA
Sbjct: 50  AEDGDKPMSKT-QKRKLKKAAAIERKERA 77


>U82968-1|AAB40927.1|  281|Caenorhabditis elegans MAD-like-1 homolog
           protein.
          Length = 281

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 95  PVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 199
           P  ++ ++ +     LE+ RRA +  CL+ LK L+
Sbjct: 88  PARKSSKHSRTAHNELEKTRRANLRGCLETLKMLV 122


>U40947-2|AAC48067.1|  281|Caenorhabditis elegans Mad-like protein 1
           protein.
          Length = 281

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 95  PVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 199
           P  ++ ++ +     LE+ RRA +  CL+ LK L+
Sbjct: 88  PARKSSKHSRTAHNELEKTRRANLRGCLETLKMLV 122


>Z93389-2|CAB07671.2|  355|Caenorhabditis elegans Hypothetical
           protein T13F3.3 protein.
          Length = 355

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 79  RERIRDLVRH-CRHCVFSKSVR 17
           R +IR L RH CR+C FSK V+
Sbjct: 55  RCQIRYLDRHFCRYCRFSKCVK 76


>Z35639-5|CAA84699.2|  534|Caenorhabditis elegans Hypothetical
           protein D2045.9 protein.
          Length = 534

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 32  EHTMSTMSYEIAYSLADDGPQP-VSRT 109
           E   ST+ Y+IA  LAD+ P P VSR+
Sbjct: 250 EERRSTIRYQIADFLADERPLPFVSRS 276


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
           trithorax-related protein LIN-59 protein.
          Length = 1312

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 89  PQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALRS 217
           P PV    Q+R  ++ M+ERK      +  +++ EL +S L S
Sbjct: 432 PPPVD-PIQFRLKVREMMERKLEQLTQKMSEDMTELRLSHLTS 473


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
           lineage protein 59 protein.
          Length = 1312

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 89  PQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELMVSALRS 217
           P PV    Q+R  ++ M+ERK      +  +++ EL +S L S
Sbjct: 432 PPPVD-PIQFRLKVREMMERKLEQLTQKMSEDMTELRLSHLTS 473


>Z82054-3|CAB04841.2|  269|Caenorhabditis elegans Hypothetical
           protein T26F2.2 protein.
          Length = 269

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 199 HQLFKFVQATVDAGAPLT 146
           H +F FV+ T + G PLT
Sbjct: 63  HSIFNFVKKTSERGTPLT 80


>U80815-10|AAO91678.1|  437|Caenorhabditis elegans Hypothetical
           protein W02C12.3g protein.
          Length = 437

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 80  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 199
           D+ P+   R  + +K +  M+ER+RR  IN  + EL +++
Sbjct: 226 DNDPEDYYRDRR-KKDIHNMIERRRRYNINDRIKELGQML 264


>U80815-9|AAV34785.1|  361|Caenorhabditis elegans Hypothetical
           protein W02C12.3h protein.
          Length = 361

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 80  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 199
           D+ P+   R  + +K +  M+ER+RR  IN  + EL +++
Sbjct: 89  DNDPEDYYRDRR-KKDIHNMIERRRRYNINDRIKELGQML 127


>U80815-8|AAB37997.1|  498|Caenorhabditis elegans Hypothetical
           protein W02C12.3a protein.
          Length = 498

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 80  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 199
           D+ P+   R  + +K +  M+ER+RR  IN  + EL +++
Sbjct: 226 DNDPEDYYRDRR-KKDIHNMIERRRRYNINDRIKELGQML 264


>U80815-7|AAO91677.1|  473|Caenorhabditis elegans Hypothetical
           protein W02C12.3f protein.
          Length = 473

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 80  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 199
           D+ P+   R  + +K +  M+ER+RR  IN  + EL +++
Sbjct: 201 DNDPEDYYRDRR-KKDIHNMIERRRRYNINDRIKELGQML 239


>U80815-6|AAO91675.1|  464|Caenorhabditis elegans Hypothetical
           protein W02C12.3d protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 80  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 199
           D+ P+   R  + +K +  M+ER+RR  IN  + EL +++
Sbjct: 192 DNDPEDYYRDRR-KKDIHNMIERRRRYNINDRIKELGQML 230


>U80815-5|AAO91676.1|  439|Caenorhabditis elegans Hypothetical
           protein W02C12.3e protein.
          Length = 439

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 80  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 199
           D+ P+   R  + +K +  M+ER+RR  IN  + EL +++
Sbjct: 167 DNDPEDYYRDRR-KKDIHNMIERRRRYNINDRIKELGQML 205


>U80815-4|AAO91674.1|  524|Caenorhabditis elegans Hypothetical
           protein W02C12.3c protein.
          Length = 524

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 80  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 199
           D+ P+   R  + +K +  M+ER+RR  IN  + EL +++
Sbjct: 252 DNDPEDYYRDRR-KKDIHNMIERRRRYNINDRIKELGQML 290


>U80815-3|AAK73899.1|  499|Caenorhabditis elegans Hypothetical
           protein W02C12.3b protein.
          Length = 499

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 80  DDGPQPVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 199
           D+ P+   R  + +K +  M+ER+RR  IN  + EL +++
Sbjct: 227 DNDPEDYYRDRR-KKDIHNMIERRRRYNINDRIKELGQML 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,336,586
Number of Sequences: 27780
Number of extensions: 65688
Number of successful extensions: 201
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)