Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_L01
         (221 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    27   0.021
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.0  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           20   3.1  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           20   3.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   4.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   5.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   5.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   5.5  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 0.021
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 92  QPVSRTYQYRKVMKPMLERKRRARINRCLDELKELM 199
           +P ++  Q  +     LE+ RRA +  CL++LK L+
Sbjct: 40  RPKTKKSQGSRTTHNELEKNRRAHLRNCLEKLKVLV 75


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 1.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 96  PSRALINIAK**SRCSSVRGAPASTVAW 179
           PS   I+  +  +   +VRG P  TV+W
Sbjct: 314 PSTQTIDFGRPATFTCNVRGNPIKTVSW 341


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 MLER-KRRARINRCLDELKELMVSALR 214
           ++ER K+R +       LKE+M+  LR
Sbjct: 113 LVERHKKRGQTKEEFQNLKEVMLEVLR 139


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 137 MLER-KRRARINRCLDELKELMVSALR 214
           ++ER K+R +       LKE+M+  LR
Sbjct: 113 LVERHKKRGQTKEEFQNLKEVMLEVLR 139


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 4.1
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 119 DIDKCARRVAGRRPRANTRSRK 54
           D D+C R+   +R    +RSR+
Sbjct: 2   DKDECDRKSLSQRKIIRSRSRR 23


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 156 RLLRSSIGFIT 124
           ++ RSSIGF+T
Sbjct: 242 KIRRSSIGFLT 252


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
 Frame = -2

Query: 100 DGLRAVVRERIR-DLVRHCRH---CVFSKSVRLRC 8
           +G +   +  +R DL   CR    C+  K  R RC
Sbjct: 128 EGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRC 162


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.4 bits (38), Expect = 5.5
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
 Frame = -2

Query: 100 DGLRAVVRERIR-DLVRHCRH---CVFSKSVRLRC 8
           +G +   +  +R DL   CR    C+  K  R RC
Sbjct: 128 EGCKGFFKRTVRKDLSYACREEKSCIIDKRQRNRC 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,935
Number of Sequences: 438
Number of extensions: 737
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3407265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)