Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K23
         (243 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    93   4e-21
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    30   0.049
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch...    30   0.049
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   0.61 
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    26   0.61 
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    25   1.4  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   1.9  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    24   2.4  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    24   2.4  
SPBC839.06 |cta3||P-type ATPase, calcium transporting Cta3|Schiz...    24   2.4  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    23   4.3  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    23   4.3  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    23   5.6  
SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    23   5.6  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    23   7.5  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    22   9.9  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         22   9.9  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    22   9.9  

>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 93.5 bits (222), Expect = 4e-21
 Identities = 43/58 (74%), Positives = 53/58 (91%)
 Frame = +3

Query: 69  MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETL 242
           MKLVRFLMKL++ETV+IELKNG++VHGTIT VD+ MNTHLKAVK+T+K RE + +ETL
Sbjct: 1   MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETL 58


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 29.9 bits (64), Expect = 0.049
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 90  MKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLK 212
           ++LSHE    EL+  SV+   +  VD+  N+H +++ V L+
Sbjct: 208 IRLSHEAHVAELETISVILYQLAKVDLFQNSHFESLLVMLR 248


>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 96

 Score = 29.9 bits (64), Expect = 0.049
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 69  MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKV 203
           M    F   L    VT+ELKN   + G +  VD  +N  L+ + V
Sbjct: 1   MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISV 45


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 0.61
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = -3

Query: 226 NSSRFFKVTFTAFRCVFM-ATSTP-----VIVPWTTLPFFNSIVTVSWLSFIKNLTSFIL 65
           NSS     T T+F    + AT+TP     + +P T LP    ++  S+   +  +T F+L
Sbjct: 620 NSSTLLSPTSTSFTSYTVSATATPTSTSHIPIP-TVLPPTQPVLEPSYREIVAFITFFLL 678

Query: 64  LAYRLIFIEYT 32
            A+  + + +T
Sbjct: 679 FAFIFVAVIWT 689


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 26.2 bits (55), Expect = 0.61
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 111 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREE 224
           + +ELKNG   +G +   D  MN  L+ V  T+ + ++
Sbjct: 15  ILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDK 52


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -3

Query: 208 KVTFTAFRCVFMATSTPVI--VPWTTLPFFNSIVTVSWLSFIKNLTSFILLAY 56
           K  F  F+ +F A    V+  +P+T + F+N IV  S+   +     +  LAY
Sbjct: 178 KAFFCTFQLLFYAFRPLVVRRLPFTLMHFWNIIVQFSFDYLVVRYVGWRALAY 230


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 145 WTTLPFFNSIVTVSWLSFIKNLTSFILLAYRLIFIE 38
           W T PF+   V + WL F+ N T+ + L    ++I+
Sbjct: 246 WGTSPFYYYFVRLPWL-FL-NPTTLLFLLISFVYIK 279


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 102 HETVTIELKNGSVVHGTITGVD 167
           +E  T+ ++NG + HGT  G +
Sbjct: 43  NEIATLTIRNGPIFHGTSFGAN 64


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 105 ETVTIELKNGSVVHGTITGVDVAM 176
           E  T+E K  S+VH ++T  D+A+
Sbjct: 449 EEKTLEEKKPSMVHDSVTSDDIAV 472


>SPBC839.06 |cta3||P-type ATPase, calcium transporting
           Cta3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1037

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 147 GTITGVDVAMNTHLKAVKVTLKN 215
           GT++G++ AM   LK  K  +KN
Sbjct: 404 GTVSGLEAAMQDVLKEKKQEMKN 426


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = -3

Query: 160 PVIVPWTTLPFFNSIVTVSWLSFIKNL 80
           P + PW  +   + + T+ W+   +NL
Sbjct: 530 PKLSPWNMMIVLHGLTTIGWILSRENL 556


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 136 LPFFNSIVTVSWLSFIKNLTSFIL---LAYRLIFIEYTGG 26
           +P+ +  + V W+ FI +  +FIL   L++  I  ++T G
Sbjct: 471 IPYMSGRLMVEWILFIIHRPTFILRFILSFVNILFDWTVG 510


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 100 LSFIKNLTSFILLAYRLIFIEY 35
           ++F+++LTSF + A   + IEY
Sbjct: 255 IAFLQSLTSFFMKANTALKIEY 276


>SPAC12B10.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 166 STPVIVPWTTLPFF 125
           +TP IV WT +P F
Sbjct: 145 NTPTIVHWTVIPKF 158


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 154 IVPWTTLPFFNSIVTVSWLSFIKNLTSFILLAYRLIF 44
           IV W  L  F+  +   +LSF  N+ S +  A  +++
Sbjct: 134 IVLWFVLGIFSFFIPTKFLSFWGNIISVMGSALFIVY 170


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 182 RIHGDIDTSYSSVDNAAVFQLNSHR 108
           R   ++D S   V+NAA+  +NS R
Sbjct: 19  RKENNLDGSNRDVENAALVTINSKR 43


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -3

Query: 238 VSNCNSSRFFKVTFTAFRCVFMATSTPVIVPWTTLPFFNSIVTVSWLSFIKNLTSFILLA 59
           VS+ +SS     +F++          P+    +T PF NS  +V W+        F   A
Sbjct: 66  VSHTSSSPSVGTSFSSIN--LREVKNPLAGSDSTAPFINSTNSVLWIRVRNREARFRQAA 123

Query: 58  Y 56
           Y
Sbjct: 124 Y 124


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 63  WLIG*FL*NTQAASVHPDPPC 1
           W  G F+   ++A  HP P C
Sbjct: 376 WKNGLFVVGPESAGAHPGPVC 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,013,351
Number of Sequences: 5004
Number of extensions: 16885
Number of successful extensions: 63
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)