Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K23
(243 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28738-8|AAA68313.1| 126|Caenorhabditis elegans Small nuclear r... 93 2e-20
U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like pro... 29 0.33
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 29 0.44
Z81118-7|CAB03328.3| 97|Caenorhabditis elegans Hypothetical pr... 28 1.0
U80031-2|AAB37612.1| 468|Caenorhabditis elegans Hypothetical pr... 27 1.8
L15188-3|AAA27948.2| 348|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr... 27 2.3
Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr... 25 5.4
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein. 25 5.4
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ... 25 5.4
U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of... 25 7.1
U41013-3|AAA82302.1| 433|Caenorhabditis elegans Protein kinase ... 25 7.1
U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical pr... 25 7.1
J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein ( C.ele... 25 7.1
Z81142-5|CAB03507.1| 319|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z75534-1|CAH04713.2| 326|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z69792-6|CAA93669.2| 398|Caenorhabditis elegans Hypothetical pr... 25 9.4
Z69790-5|CAA93657.2| 398|Caenorhabditis elegans Hypothetical pr... 25 9.4
U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric chr... 25 9.4
U58763-1|AAK68877.2| 559|Caenorhabditis elegans Hypothetical pr... 25 9.4
AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like p... 25 9.4
AF024492-4|AAF98617.1| 848|Caenorhabditis elegans Hypothetical ... 25 9.4
>U28738-8|AAA68313.1| 126|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 3 protein.
Length = 126
Score = 93.5 bits (222), Expect = 2e-20
Identities = 44/58 (75%), Positives = 52/58 (89%)
Frame = +3
Query: 69 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETL 242
MKLVRFLMKLSHETV IELKNG+ V GTI GVDVAMNTHL+AV +T+KN+E ++L+TL
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTL 58
>U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like
protein protein 4 protein.
Length = 123
Score = 29.5 bits (63), Expect = 0.33
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 87 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREE 224
L + + +ELKNG +G + D MN HL V T K+ ++
Sbjct: 8 LKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDK 53
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 29.1 bits (62), Expect = 0.44
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 150 TITGVDVAMNTHLKAVKVTLKNREELQ 230
T+ G++VA N H K + KNR +Q
Sbjct: 179 TLKGIEVASNPHFKKTRAPTKNRAAIQ 205
>Z81118-7|CAB03328.3| 97|Caenorhabditis elegans Hypothetical
protein T10G3.6 protein.
Length = 97
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 69 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT 206
M F L + V +ELKN + GT+ VD +N L + V+
Sbjct: 1 MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVS 46
>U80031-2|AAB37612.1| 468|Caenorhabditis elegans Hypothetical
protein B0554.5 protein.
Length = 468
Score = 27.1 bits (57), Expect = 1.8
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = -3
Query: 238 VSNC-NSSRFFKVTFT-AFRCVFMATSTPVIVPWTTLPFFNSIVTVSWLSFIKNLTSFIL 65
V NC SS K TF AF+ +P ++ L + + T WLS SF +
Sbjct: 220 VENCIESSSEKKETFMEAFKLTCSTVVSPKMLQLFPLFVLSGLNTSFWLSVFPTAMSFTM 279
Query: 64 LAYRLIFIE--YTGGVGS 17
LI++ Y+ VGS
Sbjct: 280 QNSNLIYLAAVYSFAVGS 297
>L15188-3|AAA27948.2| 348|Caenorhabditis elegans Hypothetical
protein C14B9.3 protein.
Length = 348
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = -3
Query: 223 SSRFFKVTFTAFRCVFMATSTPVIVPWTTLPFFNSIVTVSWLSFIKNLTSFILLAY 56
++RFFK+ F V M T+T V+ +++ NS +S I L S ++ Y
Sbjct: 203 ANRFFKIVFAMSSVVSMLTTTTVMFAFSS----NSESKWDTVSMIMKLISVVIYVY 254
>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
protein F47A4.5 protein.
Length = 1071
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Frame = +2
Query: 137 RCPRNYNWCR--CRHEYAS 187
RCP+ Y CR CRH+ +S
Sbjct: 679 RCPKGYKGCRSNCRHDCSS 697
>Z66494-4|CAA91263.1| 599|Caenorhabditis elegans Hypothetical
protein C34C6.4 protein.
Length = 599
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 207 KLLLPPSDAYSWRH 166
K LLPPSDA W H
Sbjct: 585 KQLLPPSDANVWHH 598
>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
C05C12.3 protein.
Length = 1694
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -3
Query: 199 FTAFRCVFMATSTPVIVPWTT--LPFFNSIVTVSWLSFIKNLTSFILLAYRLI 47
F++ R V + T + W + F+ + +T WL F + ILL Y L+
Sbjct: 1048 FSSSRNVTVQVYTQRPLSWKKKIMEFYKAPITTYWLWFFAFIWFLILLTYNLL 1100
>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
Length = 1694
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -3
Query: 199 FTAFRCVFMATSTPVIVPWTT--LPFFNSIVTVSWLSFIKNLTSFILLAYRLI 47
F++ R V + T + W + F+ + +T WL F + ILL Y L+
Sbjct: 1048 FSSSRNVTVQVYTQRPLSWKKKIMEFYKAPITTYWLWFFAFIWFLILLTYNLL 1100
>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1681
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -3
Query: 199 FTAFRCVFMATSTPVIVPWTT--LPFFNSIVTVSWLSFIKNLTSFILLAYRLI 47
F++ R V + T + W + F+ + +T WL F + ILL Y L+
Sbjct: 1035 FSSSRNVTVQVYTQRPLSWKKKIMEFYKAPITTYWLWFFAFIWFLILLTYNLL 1087
>U52001-1|AAA96093.1| 656|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 1, isoform a protein.
Length = 656
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 105 ETVTIELKNGSVVHGTITGVDVAMNTHL 188
E V I LK+GSV+ I GVD M L
Sbjct: 203 EVVKILLKHGSVLMKDIQGVDPLMGAAL 230
>U41013-3|AAA82302.1| 433|Caenorhabditis elegans Protein kinase
protein 26 protein.
Length = 433
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 81 RFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLK 212
R +L H+ +TI K G G ++ + +K V+V +K
Sbjct: 120 RQFWELEHDQITIHKKLGEGAFGEVSSGVMKFKKGMKTVQVAIK 163
>U39742-6|AAK39195.2| 1059|Caenorhabditis elegans Hypothetical
protein C25F6.3 protein.
Length = 1059
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -2
Query: 179 IHGDIDTSYSSVDNAAVFQLNSHRFVAELH 90
+ G +T+ SV++ + N HR++ LH
Sbjct: 496 VAGVAETTVESVNDGKIAAWNMHRYIQSLH 525
>J03172-1|AAA28055.1| 656|Caenorhabditis elegans protein (
C.elegans fem-1 gene,complete cds. ).
Length = 656
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 105 ETVTIELKNGSVVHGTITGVDVAMNTHL 188
E V I LK+GSV+ I GVD M L
Sbjct: 203 EVVKILLKHGSVLMKDIQGVDPLMGAAL 230
>Z81142-5|CAB03507.1| 319|Caenorhabditis elegans Hypothetical
protein ZK1037.8 protein.
Length = 319
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -3
Query: 151 VPWTTLPFFNSIVTVSWLSFIKNLTSFILLAYRLIFI 41
VP +L F + W+ NLT+++L ++F+
Sbjct: 173 VPDKSLIFVINFYEKGWVKLAGNLTTYVLFVEIIVFV 209
>Z75534-1|CAH04713.2| 326|Caenorhabditis elegans Hypothetical
protein F08A10.2 protein.
Length = 326
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 181 VFMATSTPVIVPWTTLPFFNSIVTV--SWLSFIKNLTSFILLAYRLIFI 41
VF++++T +I T +P IV + S ++ I+N F+L YR I +
Sbjct: 81 VFISSNTKIIT--TAVPILILIVYLMSSVITSIQNSLLFLLALYRFIIV 127
>Z69792-6|CAA93669.2| 398|Caenorhabditis elegans Hypothetical
protein F40E10.6 protein.
Length = 398
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 145 WTTLPFFNSIVTVSWLSFIKNLTSFILLAYRLIFIEYTGG 26
W +L FF+ V + + S +F++ ++ + EY GG
Sbjct: 67 WLSLIFFSDNVYIYFNSIRDCYEAFVIYSFLSLCYEYLGG 106
>Z69790-5|CAA93657.2| 398|Caenorhabditis elegans Hypothetical
protein F40E10.6 protein.
Length = 398
Score = 24.6 bits (51), Expect = 9.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 145 WTTLPFFNSIVTVSWLSFIKNLTSFILLAYRLIFIEYTGG 26
W +L FF+ V + + S +F++ ++ + EY GG
Sbjct: 67 WLSLIFFSDNVYIYFNSIRDCYEAFVIYSFLSLCYEYLGG 106
>U88169-8|AAB42237.1| 866|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 4 protein.
Length = 866
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 105 ETVTIELKNGSVVHGTITGVDVAMNTHLKA--VKVTLKNREELQ 230
+TVTIE S + GT+T A ++ L+ K T K+ LQ
Sbjct: 303 KTVTIEKNQSSEMQGTVTVAKDAEHSSLQKTFTKPTEKDESSLQ 346
>U58763-1|AAK68877.2| 559|Caenorhabditis elegans Hypothetical
protein F10C5.2 protein.
Length = 559
Score = 24.6 bits (51), Expect = 9.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 92 EAQPRNGDY*VEKRQRCPRNYNWCRCRH-EYASEGGK 199
++ PR+G++ E R R PR R R EY + G+
Sbjct: 477 DSTPRHGNFQSEHRPRMPRTEQIYRSRRVEYDVKNGR 513
>AF321299-1|AAK07638.1| 866|Caenorhabditis elegans CENP-C-like
protein HCP-4 protein.
Length = 866
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 105 ETVTIELKNGSVVHGTITGVDVAMNTHLKA--VKVTLKNREELQ 230
+TVTIE S + GT+T A ++ L+ K T K+ LQ
Sbjct: 303 KTVTIEKNQSSEMQGTVTVAKDAEHSSLQKTFTKPTEKDESSLQ 346
>AF024492-4|AAF98617.1| 848|Caenorhabditis elegans Hypothetical
protein F14F9.3 protein.
Length = 848
Score = 24.6 bits (51), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 83 IFDEAQPRNGDY*VEKRQRCPRNYNWCR 166
+FDE +N + + CP Y+WCR
Sbjct: 577 LFDEIVEKNEKK--TQNRSCPCGYSWCR 602
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,658,231
Number of Sequences: 27780
Number of extensions: 97221
Number of successful extensions: 350
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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