Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K23
(243 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 0.71
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 1.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 1.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 1.2
AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protei... 21 2.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 3.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 3.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 3.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 3.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 3.8
AY217747-1|AAP45005.1| 246|Apis mellifera short-chain dehydroge... 20 5.0
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 19 6.7
AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly pro... 19 6.7
AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor pr... 19 6.7
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 19 8.8
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 19 8.8
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.6 bits (46), Expect = 0.71
Identities = 8/31 (25%), Positives = 18/31 (58%)
Frame = -3
Query: 115 VTVSWLSFIKNLTSFILLAYRLIFIEYTGGV 23
+ +SW+S + + ++ Y++I I GG+
Sbjct: 1098 IRISWMSPPLSAANGVITGYKVIVIPSGGGI 1128
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.8 bits (44), Expect = 1.2
Identities = 7/31 (22%), Positives = 16/31 (51%)
Frame = -3
Query: 184 CVFMATSTPVIVPWTTLPFFNSIVTVSWLSF 92
C+ + +I+ + FFN ++ W++F
Sbjct: 94 CMLLLLVANLIILPVAISFFNDDLSTRWIAF 124
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.8 bits (44), Expect = 1.2
Identities = 7/31 (22%), Positives = 16/31 (51%)
Frame = -3
Query: 184 CVFMATSTPVIVPWTTLPFFNSIVTVSWLSF 92
C+ + +I+ + FFN ++ W++F
Sbjct: 94 CMLLLLVANLIILPVAISFFNDDLSTRWIAF 124
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.8 bits (44), Expect = 1.2
Identities = 7/31 (22%), Positives = 16/31 (51%)
Frame = -3
Query: 184 CVFMATSTPVIVPWTTLPFFNSIVTVSWLSF 92
C+ + +I+ + FFN ++ W++F
Sbjct: 94 CMLLLLVANLIILPVAISFFNDDLSTRWIAF 124
>AF469010-1|AAL93136.1| 678|Apis mellifera cGMP-dependent protein
kinase foraging protein.
Length = 678
Score = 21.0 bits (42), Expect = 2.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 41 YKN*PISQQNEASKIFDEAQPRNGDY*VEKRQR 139
+KN P + S + +E NGDY + + R
Sbjct: 221 FKNLPEETLIKISDVLEETFYNNGDYIIRQGAR 253
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 20.2 bits (40), Expect = 3.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1
Query: 240 KSPIVILHDFSKLLLPP 190
++ +V+ HD S L +PP
Sbjct: 88 QTSVVVTHDGSCLYVPP 104
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.2 bits (40), Expect = 3.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1
Query: 240 KSPIVILHDFSKLLLPP 190
++ +V+ HD S L +PP
Sbjct: 88 QTSVVVTHDGSCLYVPP 104
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.2 bits (40), Expect = 3.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1
Query: 240 KSPIVILHDFSKLLLPP 190
++ +V+ HD S L +PP
Sbjct: 88 QTSVVVTHDGSCLYVPP 104
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 20.2 bits (40), Expect = 3.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1
Query: 240 KSPIVILHDFSKLLLPP 190
++ +V+ HD S L +PP
Sbjct: 88 QTSVVVTHDGSCLYVPP 104
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.2 bits (40), Expect = 3.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1
Query: 240 KSPIVILHDFSKLLLPP 190
++ +V+ HD S L +PP
Sbjct: 88 QTSVVVTHDGSCLYVPP 104
>AY217747-1|AAP45005.1| 246|Apis mellifera short-chain
dehydrogenase/reductase protein.
Length = 246
Score = 19.8 bits (39), Expect = 5.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +3
Query: 141 VHGTITGVDVAMNTHLKAVKVTLKNREEL 227
V + +D+ +N + VTL+N E L
Sbjct: 78 VEKNLGAIDILINNATINIDVTLQNDEVL 106
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 19.4 bits (38), Expect = 6.7
Identities = 6/21 (28%), Positives = 13/21 (61%)
Frame = -3
Query: 109 VSWLSFIKNLTSFILLAYRLI 47
+ WLSF + ++I++ L+
Sbjct: 408 IEWLSFFIVIFTYIIILITLV 428
>AY398690-1|AAR83734.1| 416|Apis mellifera major royal jelly
protein 8 protein.
Length = 416
Score = 19.4 bits (38), Expect = 6.7
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -3
Query: 88 KNLTSFILLAYRLIFIEYTGGVGSPRSS 5
+NLT+ + + Y +I+Y G R +
Sbjct: 23 RNLTNSLKVIYEWKYIDYDFGSDEKRQA 50
>AM076717-1|CAJ28210.1| 501|Apis mellifera serotonin receptor
protein.
Length = 501
Score = 19.4 bits (38), Expect = 6.7
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +3
Query: 105 ETVTIELKNGSVVHGTITG 161
+ + I L GS++ GT+ G
Sbjct: 40 QAILIALVLGSIIVGTVIG 58
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 19.0 bits (37), Expect = 8.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 168 VAMNTHLKAVKVTLKNREELQL 233
V N H+K V V + EEL +
Sbjct: 660 VLSNIHVKEVLVHHREMEELNV 681
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 19.0 bits (37), Expect = 8.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 168 VAMNTHLKAVKVTLKNREELQL 233
V N H+K V V + EEL +
Sbjct: 660 VLSNIHVKEVLVHHREMEELNV 681
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,815
Number of Sequences: 438
Number of extensions: 1196
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used: 4149981
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)
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