Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K22
(363 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 145 7e-36
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical... 30 0.43
U50191-6|AAK31554.2| 235|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical pr... 27 3.0
Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical pr... 27 3.0
Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical pr... 27 3.0
Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical pr... 27 3.0
AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical ... 27 3.0
Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical pr... 27 5.3
AF024491-2|AAT92081.1| 765|Caenorhabditis elegans Hypothetical ... 26 9.3
>Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical
protein F56F3.5 protein.
Length = 257
Score = 145 bits (352), Expect = 7e-36
Identities = 68/92 (73%), Positives = 79/92 (85%)
Frame = +1
Query: 79 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 258
VDPF+RK+WYD+KAP+MF RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL +++E
Sbjct: 20 VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSE 76
Query: 259 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKL 354
FRKF+LIAEDVQG+NVL NFH M +T DKL
Sbjct: 77 ADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKL 108
>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
protein Y66D12A.14 protein.
Length = 2870
Score = 30.3 bits (65), Expect = 0.43
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -2
Query: 221 TSKTRPFRPSDAIFVPWVRLTRVVPTCLLVNMDGA 117
TSK +P R D I V R T CL V GA
Sbjct: 2175 TSKAQPIRSDDVISVAGTRSTETTMKCLAVQFTGA 2209
>U50191-6|AAK31554.2| 235|Caenorhabditis elegans Hypothetical
protein T14B4.8 protein.
Length = 235
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -2
Query: 188 AIFVPWVRLTRVVPTCLLVNMDGALTSYQSLRVKG 84
+ F+P++R R VPT +++ +G + Y +L G
Sbjct: 119 SFFIPFLRPRRTVPTFSIIDWNGEVLGYYALASDG 153
>Z29115-6|CAA82365.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 119 RRPCSPRDKWAPPLSIAPREQKL 187
R P ++ + PP I PREQKL
Sbjct: 86 RMPSKIKEAFIPPAKITPREQKL 108
>Z29115-5|CAA82366.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 119 RRPCSPRDKWAPPLSIAPREQKL 187
R P ++ + PP I PREQKL
Sbjct: 86 RMPSKIKEAFIPPAKITPREQKL 108
>Z19153-7|CAA79550.2| 1374|Caenorhabditis elegans Hypothetical
protein C38C10.5b protein.
Length = 1374
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 119 RRPCSPRDKWAPPLSIAPREQKL 187
R P ++ + PP I PREQKL
Sbjct: 86 RMPSKIKEAFIPPAKITPREQKL 108
>Z19153-6|CAA79551.2| 1368|Caenorhabditis elegans Hypothetical
protein C38C10.5a protein.
Length = 1368
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 119 RRPCSPRDKWAPPLSIAPREQKL 187
R P ++ + PP I PREQKL
Sbjct: 86 RMPSKIKEAFIPPAKITPREQKL 108
>AC024756-2|AAK29884.1| 413|Caenorhabditis elegans Hypothetical
protein Y34D9A.1 protein.
Length = 413
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 339 EVHAVEIAENITSLDILSDKSELAE 265
E+H +E AE++ SL +L KSE+ +
Sbjct: 63 EMHIIEPAEHMKSLKVLMQKSEIEQ 87
>Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical
protein E01G4.4 protein.
Length = 534
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 259 FPHHYQPGDQQGRPQKHAPLDPQMQ 185
+ ++ Q QQGRPQ++A PQ Q
Sbjct: 34 YGYNNQQQQQQGRPQQYAGYPPQRQ 58
>AF024491-2|AAT92081.1| 765|Caenorhabditis elegans Hypothetical
protein C24A1.3b protein.
Length = 765
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 324 EIAENITSLDILSDKSELAERPFRITISLEISKG 223
E EN + +L ++ + + FR+ ISL++++G
Sbjct: 593 EFVENGSLFRLLHEEKRVMDPAFRLRISLDVARG 626
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,252,761
Number of Sequences: 27780
Number of extensions: 169500
Number of successful extensions: 399
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -