Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K21
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   1.3  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    26   1.7  
SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    25   2.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   3.0  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   4.0  
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc...    25   4.0  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   7.0  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    23   9.2  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    23   9.2  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = -1

Query: 167 YIDLYLFYEMLNLMYF*PLSIRNIKNKIMILQ 72
           Y  +Y+F+ + NL+Y     ++ +++++ I+Q
Sbjct: 746 YSSMYVFFRLFNLLYERLYELQRLEDQVSIIQ 777


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 221 DEGEVCVLLNQGRYID 268
           +E E CV L QGRY D
Sbjct: 308 EEAEACVRLMQGRYFD 323


>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 113 MAKNTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDEGEVC 238
           +A   S++ +RK  I Q   D F  D+     P  PD  + C
Sbjct: 18  VANAGSNAEWRKRIIYQILTDRFAVDDGSTDNPCDPDANQYC 59


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 158  DQYNEDNFKEDEADQAGPTGPDEGE 232
            D  N  N  EDEAD+ G     +G+
Sbjct: 4348 DSMNSTNIAEDEADEVGDKQLQDGQ 4372


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 116 AKNTSSSAFRKIDIDQYNEDNFKEDEADQAGPT 214
           +K T S    ++   + NEDN  + +AD  GPT
Sbjct: 474 SKPTPSPPAEQLTDQKQNEDNEDKVKADSNGPT 506


>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 210

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 119 KNTSSSAFRKIDIDQYNE 172
           + TS++ FRK DID+Y +
Sbjct: 170 EQTSTTVFRKEDIDRYEQ 187


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 23  PYSCQTIESFCAKYLFTEVSLFYFLY 100
           PY    +  FC  + F+  S F FL+
Sbjct: 99  PYDSNVVPFFCFFFYFSLFSFFSFLF 124


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 20  TPYSCQTIESFCAKYLFTEVSL 85
           TP++    E+FC  Y+F E  +
Sbjct: 512 TPHTEDLTENFCTYYMFDETPI 533


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +2

Query: 137  AFRKIDIDQYNEDNFKEDEADQAGPTGPDEGEVCVLLNQGRYIDALRLVL 286
            A+++ +++  N DN     +DQ     PD  +   +L +  YIDA R VL
Sbjct: 992  AYQEYELES-NIDNLSSYISDQNLELLPDYEQRIKVLQELGYIDAERTVL 1040


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,146,945
Number of Sequences: 5004
Number of extensions: 18130
Number of successful extensions: 52
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)