Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K21
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739...    29   0.69 
05_06_0082 - 25425050-25425479,25426551-25426783                       29   0.91 
09_04_0435 - 17545879-17546605,17546721-17546782,17547123-175473...    28   2.1  
08_01_0540 + 4691929-4692014,4692915-4693125,4693756-4693885,469...    27   3.7  

>07_03_1567 -
           27772815-27773302,27773471-27773561,27773641-27773988,
           27774929-27775110,27775191-27775368,27775453-27775605,
           27775993-27776232,27776369-27776449,27776485-27776730,
           27777151-27777240,27777536-27777778,27778365-27778529,
           27779017-27779080,27779162-27779286,27779383-27779476,
           27779647-27779714,27779798-27779989,27780618-27780752,
           27780847-27780934,27781014-27781107,27781484-27781547,
           27781657-27781708,27781911-27782014,27782099-27782158,
           27782687-27782770,27782892-27783125,27783442-27783864,
           27784675-27784736,27784867-27785521
          Length = 1700

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 119 KNTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDE 226
           K T  +A+   D D+YN++N  ED+ D A    PD+
Sbjct: 190 KPTKYNAYEDEDDDEYNDENDDEDD-DDADEDDPDD 224


>05_06_0082 - 25425050-25425479,25426551-25426783
          Length = 220

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 68  FTEVSLFYFLYF*SIMAKNTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDEGE 232
           F E    YF+   ++ A N  + AF ++    Y   N K  EA + G  GP +GE
Sbjct: 148 FAEAESMYFMETSALDATNVDN-AFAEVLTQIYQIVNKKPVEAPEDGSAGPGKGE 201


>09_04_0435 - 17545879-17546605,17546721-17546782,17547123-17547335,
            17547506-17547590,17547904-17548061,17548174-17548294,
            17548765-17548927,17548973-17549097,17550800-17550888,
            17550970-17551636,17552671-17552717,17553506-17553862
          Length = 937

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +2

Query: 155  IDQYNEDNFKEDEADQAGPTGPDEGEVCVLL--NQGRYIDALRLVLNNAPLGSSNQQVKD 328
            +DQ  E         QAG  G DEG+V      NQG++ D+ R    ++ + SSN+++ +
Sbjct: 848  VDQAAEVEMLHQHQHQAGRGGWDEGDVMPFFYSNQGKHHDSSR----SSNISSSNRKLTE 903


>08_01_0540 +
           4691929-4692014,4692915-4693125,4693756-4693885,
           4695422-4696072,4696179-4696395,4697040-4697111,
           4697167-4697257,4697367-4698363,4698914-4699044,
           4699584-4699802,4700110-4700805,4700912-4701121,
           4701606-4701710
          Length = 1271

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 110 IMAKNTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDEGE 232
           I  +    S F  +D D+   +    D+ D+A P   ++GE
Sbjct: 498 IQKQRIQQSKFMSVDSDRLKAEALNLDDDDEAAPVADNKGE 538


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,581,681
Number of Sequences: 37544
Number of extensions: 94668
Number of successful extensions: 239
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)