Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K21
(332 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067624-1|AAC17561.1| 152|Caenorhabditis elegans Arp2/3 comple... 54 3e-08
U88314-5|AAF99882.1| 146|Caenorhabditis elegans Hypothetical pr... 39 0.001
U58727-1|AAB00581.1| 358|Caenorhabditis elegans Hypothetical pr... 29 0.81
Z81592-9|CAB63315.1| 945|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z81117-13|CAJ80831.1| 261|Caenorhabditis elegans Hypothetical p... 27 4.3
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 26 5.7
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 26 5.7
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 26 5.7
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr... 26 7.5
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein. 26 7.5
L14429-7|AAK93871.1| 285|Caenorhabditis elegans Coenzyme q (ubi... 26 7.5
AF040653-1|ABC48248.1| 312|Caenorhabditis elegans F-box b prote... 26 7.5
AF036705-5|AAB95172.1| 544|Caenorhabditis elegans Hypothetical ... 26 7.5
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ... 25 10.0
AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical ... 25 10.0
AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical ... 25 10.0
AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical ... 25 10.0
>AF067624-1|AAC17561.1| 152|Caenorhabditis elegans Arp2/3 complex
component protein 7 protein.
Length = 152
Score = 53.6 bits (123), Expect = 3e-08
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +2
Query: 113 MAKNTSSSAFRKIDIDQYNEDNFKE-DEADQAGPTGPDEGEVCVLLNQGRYIDALRLVLN 289
M+KN ++++RK+D+D ++ + + E DE GPDE V L+ R DAL L
Sbjct: 1 MSKNMQNTSYRKLDVDSFDPEQYDENDETVDTPGLGPDERAVQGFLSSNRLEDALHAALL 60
Query: 290 NAPLGSSNQQVKD 328
+ PL + +Q VKD
Sbjct: 61 SPPLKTKDQNVKD 73
>U88314-5|AAF99882.1| 146|Caenorhabditis elegans Hypothetical
protein C46H11.3 protein.
Length = 146
Score = 38.7 bits (86), Expect = 0.001
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +2
Query: 140 FRKIDIDQYNEDNFKEDEADQAGPTGPDEGEVCVLLNQGRYIDALRLVLNNAPLGSSNQQ 319
++K ++D ++ +F ED +++ GP+ EV L R AL+ VL N P G S Q+
Sbjct: 6 YKKYNVDIFHPAHF-EDIQEESADCGPNVQEVRQFLESNRLEYALQSVLLNPPFGHSEQE 64
Query: 320 VKD 328
+K+
Sbjct: 65 LKN 67
>U58727-1|AAB00581.1| 358|Caenorhabditis elegans Hypothetical
protein D1005.3 protein.
Length = 358
Score = 29.1 bits (62), Expect = 0.81
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 47 SFCAKYLFTEVSLFYFLYF*SIMAKNTSSSAFRKIDIDQYNEDNFKEDEADQA 205
SF + + +SLF FL+ I + S FRK+ Y++ N+ + DQA
Sbjct: 4 SFHFSHFSSLLSLFLFLFL--IASHREHSKPFRKLIKKMYSKLNYSHQKGDQA 54
>Z81592-9|CAB63315.1| 945|Caenorhabditis elegans Hypothetical
protein T16G1.9 protein.
Length = 945
Score = 26.6 bits (56), Expect = 4.3
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -1
Query: 305 IQVVHYSEPILMHLYIDLDSVRHRLLPH 222
+Q++ S+P+L+ + +D++ HRL H
Sbjct: 314 MQIIELSKPLLISVGVDIEYRGHRLADH 341
>Z81117-13|CAJ80831.1| 261|Caenorhabditis elegans Hypothetical
protein T06E6.15 protein.
Length = 261
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 239 VLLNQGRYIDALRLVLNN 292
V+LN RYIDA +L LN+
Sbjct: 147 VVLNSARYIDAKKLTLNS 164
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 113 MAKNTSSSAFRKIDIDQYNEDNFKEDE 193
MAK +++S RKI ID +ED+F DE
Sbjct: 173 MAKRSAASK-RKIVIDDESEDDFINDE 198
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 113 MAKNTSSSAFRKIDIDQYNEDNFKEDE 193
MAK +++S RKI ID +ED+F DE
Sbjct: 173 MAKRSAASK-RKIVIDDESEDDFINDE 198
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 110 IMAKNTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDEGE 232
I++ + S F +I +DQ D+ K E + P+E E
Sbjct: 3840 ILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNSLKPEEAE 3880
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 110 IMAKNTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDEGE 232
I++ + S F +I +DQ D+ K E + P+E E
Sbjct: 4794 ILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNSLKPEEAE 4834
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 110 IMAKNTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDEGE 232
I++ + S F +I +DQ D+ K E + P+E E
Sbjct: 5697 ILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNSLKPEEAE 5737
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 110 IMAKNTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDEGE 232
I++ + S F +I +DQ D+ K E + P+E E
Sbjct: 6600 ILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNSLKPEEAE 6640
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 110 IMAKNTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDEGE 232
I++ + S F +I +DQ D+ K E + P+E E
Sbjct: 7503 ILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNSLKPEEAE 7543
>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical
protein C25G4.5 protein.
Length = 1263
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 122 NTSSSAFRKIDIDQYNEDNFKEDEADQAG 208
N A ++D N+ N+KEDE + AG
Sbjct: 167 NNMDDALTTTELDADNDKNWKEDEENIAG 195
>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
Length = 1263
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 122 NTSSSAFRKIDIDQYNEDNFKEDEADQAG 208
N A ++D N+ N+KEDE + AG
Sbjct: 167 NNMDDALTTTELDADNDKNWKEDEENIAG 195
>L14429-7|AAK93871.1| 285|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 5 protein.
Length = 285
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 113 MAKNTSSSAFRKIDIDQYNEDNFKEDEADQA--GPTGPDEGE 232
M K T+ FR+ ++Q N DN + + + G T DE E
Sbjct: 11 MRKPTNVGNFRQFSVNQVNSDNKRSEPGKKTHFGFTDVDEAE 52
>AF040653-1|ABC48248.1| 312|Caenorhabditis elegans F-box b protein
protein 44 protein.
Length = 312
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 36 KRLSHFVQNICLLKYHYFIFYISDR*WLKI 125
KR HF+Q+IC+ K F +++ L+I
Sbjct: 36 KRSKHFIQDICIFKAPRFYIKLAESINLRI 65
>AF036705-5|AAB95172.1| 544|Caenorhabditis elegans Hypothetical
protein F37C4.6 protein.
Length = 544
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 302 QVVHYSEPILMHLYIDLDSVRHRLLPH 222
++VH E ++ + +DL H+LLPH
Sbjct: 142 EIVHSFEQLMDYEPLDLQKPIHKLLPH 168
>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
protein Y71A12B.4 protein.
Length = 1913
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 233 VCVLLNQGRYIDALRLVLNNAPLGSSNQQ 319
V +LLNQG +DA +N PL + QQ
Sbjct: 1174 VRMLLNQGVQVDATSTTMNVIPLHLAAQQ 1202
>AL032634-3|CAE45092.1| 412|Caenorhabditis elegans Hypothetical
protein Y39G8C.4 protein.
Length = 412
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 149 IDIDQYNEDNFKEDEADQAGPTGPDE 226
+++D Y E E++ D +G GP+E
Sbjct: 54 LEVDGYGEGEEDEEDDDGSGSGGPEE 79
>AC006661-5|AAF39890.2| 488|Caenorhabditis elegans Hypothetical
protein H20J04.4a protein.
Length = 488
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 122 NTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDEGE 232
+TSS + + + +++ + EDE D+A +E E
Sbjct: 26 STSSKSVKNEEFEEFEDGEDVEDEEDEASDEDEEESE 62
>AC006661-4|ABB88208.1| 561|Caenorhabditis elegans Hypothetical
protein H20J04.4b protein.
Length = 561
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 122 NTSSSAFRKIDIDQYNEDNFKEDEADQAGPTGPDEGE 232
+TSS + + + +++ + EDE D+A +E E
Sbjct: 26 STSSKSVKNEEFEEFEDGEDVEDEEDEASDEDEEESE 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,223,215
Number of Sequences: 27780
Number of extensions: 98539
Number of successful extensions: 260
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -