Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K20
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo... 44 1e-05
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 43 3e-05
SPCC965.07c |gst2||glutathione S-transferase Gst2|Schizosaccharo... 41 1e-04
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 28 0.86
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 26 2.6
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 26 3.5
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 6.1
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.1
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 6.1
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 25 8.0
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 8.0
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 8.0
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 8.0
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 25 8.0
>SPCC191.09c |gst1||glutathione S-transferase
Gst1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 229
Score = 44.0 bits (99), Expect = 1e-05
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 164 EHLKPEFLKLSPQHTVPTLVD---DGLSIWESRAIITYLVNKYGKGSSL-YPEDARARAL 331
E PE L L+P VPTL+D + +IWES AI+ YL +KY + P D
Sbjct: 40 EQKSPEHLALNPNGRVPTLIDHHNNDYTIWESDAILIYLADKYDTERKISLPRDHPEYYK 99
Query: 332 VDQRLYF 352
V Q L+F
Sbjct: 100 VIQYLFF 106
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 42.7 bits (96), Expect = 3e-05
Identities = 23/64 (35%), Positives = 33/64 (51%)
Frame = +2
Query: 176 PEFLKLSPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVDQRLYFD 355
P + KLSP P +VDDG++ ES AI+ +LV KYG ED + ++F
Sbjct: 40 PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWMHFS 99
Query: 356 IGTL 367
+L
Sbjct: 100 EASL 103
>SPCC965.07c |gst2||glutathione S-transferase
Gst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 40.7 bits (91), Expect = 1e-04
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 161 GEHLKPEFLKLSPQHTVPTLVD---DGLSIWESRAIITYLVNKY 283
GE E L L+P VPTLVD + +IWES AI+ YL +KY
Sbjct: 39 GEQKCKEHLALNPNGRVPTLVDHKNNDYTIWESDAILIYLADKY 82
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 27.9 bits (59), Expect = 0.86
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 227 DGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVDQRLYF 352
+ LSI ESR I + ++G S L+P D + A + RL F
Sbjct: 263 NSLSI-ESRLTIANMTTEWGALSGLFPTDEKLLAWYEDRLKF 303
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 26.2 bits (55), Expect = 2.6
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +2
Query: 224 DDGLSIWESRAIITYLVNKYGKGSSL 301
+ + IW+ R ++ L+N +G G+S+
Sbjct: 6 EKAIEIWKIRRLVKQLINCHGNGTSM 31
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 25.8 bits (54), Expect = 3.5
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 394 IEVISESLVEGTNVKVQALIDERPRSSVFWVEAAALTVLVDQVSDDGARL-PDREAVID 221
I+ ++ES +EG +V+ AL E + ++ V VD + DG + P + V++
Sbjct: 251 IQFLNESEIEGQHVEEPALPSETSVPANSTLQVPTENVEVDVLGKDGTNIYPTQNQVVE 309
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 349 VQALIDERPRSSVFWVEAAALTVLVDQVSDDGARL 245
+QALI PR+ V A AL++L D ++ RL
Sbjct: 1188 LQALIKLTPRNQWSQVRALALSLLSDSLNSTSYRL 1222
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.0 bits (52), Expect = 6.1
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -2
Query: 475 NLSKSWRASSILASFSLVGRRSGKYLRIEVISESLVEGTNVKVQALIDERPRSSV 311
NLS S R+SS A FSL S + S +E N++ ++ R SS+
Sbjct: 201 NLSSSLRSSSKSAGFSLFESASNSF-----TPSSFIESANMESLSIPSRRRPSSI 250
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 6.1
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 270 WSTSTVRAAASTQKTLERGRSSISACTLTLVPSTR-DSEITSIRKYLPERLPTREKLAKI 446
+ + +V++ S K ER +S+ A L+ S+ ++ I S + Y P PTR+
Sbjct: 409 YRSKSVKSTTSHNKVPER--NSVPAYNEKLMHSSAANAAILSHKNYSPPVQPTRDDEVSQ 466
Query: 447 EDA 455
EDA
Sbjct: 467 EDA 469
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 24.6 bits (51), Expect = 8.0
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 253 ARLPDREAVID*RRDRVLRTQLQKFR 176
AR+P AV+ RR RVLR L+K+R
Sbjct: 87 ARMPS--AVVWMRRQRVLRRLLRKYR 110
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 24.6 bits (51), Expect = 8.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 279 STVRAAASTQKTLERGRSSISACTLTLVPSTRD 377
STVRA +RG++ I+ ++T+V + RD
Sbjct: 55 STVRAQNLQDLIYKRGQAGITRASVTIVFNNRD 87
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 379 RRLLLSASICRSACRQERSWPRSRTLSSFWT 471
RR + C+S ++ R TLS FWT
Sbjct: 282 RRKEVFEEYCKSVVSTKKITRRKNTLSDFWT 312
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 444 SWPASLLSAGAPANTCG 394
+WPA+LLS+GA + T G
Sbjct: 66 TWPATLLSSGAWSYTYG 82
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 24.6 bits (51), Expect = 8.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 161 GEHLKPEFLKLSPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSS 298
GE+ P ++ QH +P + +DGL +IT+L G G++
Sbjct: 285 GENAGPRKVETIKQHKIPAINEDGLFY-----LITHLPASGGTGAA 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,850,148
Number of Sequences: 5004
Number of extensions: 32971
Number of successful extensions: 102
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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