Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K18
(274 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce... 88 2e-19
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 1.1
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 25 1.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 1.9
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 25 1.9
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ... 24 3.4
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 23 5.9
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 23 5.9
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 23 7.8
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 23 7.8
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 23 7.8
>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 56
Score = 88.2 bits (209), Expect = 2e-19
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = +1
Query: 55 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 216
M H N+W+SHPR+YG+GSR C R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 1.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 19 LLGLEKTN*FYIMGHANIWYSHPRRY 96
+ G +K N FY + N WY RY
Sbjct: 234 IYGFKKANQFYTVDQYNTWYGPYSRY 259
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 25.4 bits (53), Expect = 1.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 108 PFMPSLLKQTWSHS*IWLEYLQ 173
PF S L++TW++ W E LQ
Sbjct: 396 PFSGSTLQETWTNLYYWREMLQ 417
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 1.9
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = -2
Query: 237 LNLSLVQLFKSNIMRILSEALPADIQAIFTNETMSV 130
L +SL+Q+F+S++ + + E++ D+ + E S+
Sbjct: 1593 LKISLIQIFRSHLWQKIHESVVWDLCQVLDQELESL 1628
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 25.0 bits (52), Expect = 1.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 97 GQGSRSCRACSNRHGLIRKYGLNICRQC 180
G GS A N+ G + +GLNI RQC
Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQC 311
>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 24.2 bits (50), Expect = 3.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 8 GVSLFWVSRKQTNFTSWVTQISGIHTHVDTGRVP 109
GVS VS + T + TQ SG+ +V+ + P
Sbjct: 251 GVSAANVSNESTELATSATQQSGLANNVEKSQTP 284
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 23.4 bits (48), Expect = 5.9
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 16 PLLGLEKTN*FYIMGHANIWYSHPRRYGQGSRSCRA-CSNRHGLIRKYGLNI 168
P+L ++ F I W + R GQGS +A S+ L +K LN+
Sbjct: 128 PILPIDSAGGFLIEWWNVFWDIYNARRGQGSEPAKAYMSHISNLRKKSRLNL 179
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 170 QIFKPYLRMRPCLFEQARHEREPCP 96
Q+FKP +++R L + + REP P
Sbjct: 98 QVFKPSIKLRSVLEQILQLLREPNP 122
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 23.0 bits (47), Expect = 7.8
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 122 ARHEREPCPYL 90
A H R+PCPY+
Sbjct: 4 ADHTRDPCPYV 14
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 23.0 bits (47), Expect = 7.8
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = -2
Query: 273 FFFFFFAYIKNLLNLSLVQLFKSNIM 196
FFFFFF++ + + + SN++
Sbjct: 80 FFFFFFSHCRRFHIAIFIHPYDSNVV 105
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 23.0 bits (47), Expect = 7.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 212 LNPISCAYSRKHCLQIFKPYLRMRP 138
++ I C+ S K C + PYL ++P
Sbjct: 47 IDQIFCS-SMKRCRETIAPYLELKP 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,211,821
Number of Sequences: 5004
Number of extensions: 23292
Number of successful extensions: 68
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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