Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K18
(274 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal prote... 102 3e-23
Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical pr... 32 0.064
AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear recep... 32 0.064
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 1.0
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 28 1.0
Z49908-3|CAA90094.2| 382|Caenorhabditis elegans Hypothetical pr... 27 2.4
U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical pr... 26 4.2
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z82282-8|CAB05278.1| 575|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z81592-4|CAB04728.1| 436|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical pr... 25 7.3
U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical p... 25 7.3
AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger p... 25 7.3
AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical ... 25 7.3
Z35603-2|CAA84674.1| 418|Caenorhabditis elegans Hypothetical pr... 25 9.7
AF026214-7|AAP68943.1| 640|Caenorhabditis elegans Hypothetical ... 25 9.7
>U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 29 protein.
Length = 56
Score = 102 bits (245), Expect = 3e-23
Identities = 40/56 (71%), Positives = 48/56 (85%)
Frame = +1
Query: 55 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 222
MG N+W+SHPR++G GSRSCR C+ HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56
>Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical
protein C29E6.5 protein.
Length = 449
Score = 31.9 bits (69), Expect = 0.064
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 115 CRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 216
CR C R+ + +G++ICR C + + KK
Sbjct: 47 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80
>AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear receptor
NHR-43 protein.
Length = 459
Score = 31.9 bits (69), Expect = 0.064
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 115 CRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 216
CR C R+ + +G++ICR C + + KK
Sbjct: 57 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 59 VTQISGIHTHVDTGRVPVHAEPAQTDMVSFVNMA*ISAGSASESMRMILD 208
V I+ I T + TG++ HA PA T +V + + ++ S S + +D
Sbjct: 325 VINITPIPTPISTGQIVTHASPAGTVIVPVLPLQPGTSNQESSSKTVSID 374
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 59 VTQISGIHTHVDTGRVPVHAEPAQTDMVSFVNMA*ISAGSASESMRMILD 208
V I+ I T + TG++ HA PA T +V + + ++ S S + +D
Sbjct: 325 VINITPIPTPISTGQIVTHASPAGTVIVPVLPLQPGTSNQESSSKTVSID 374
>Z49908-3|CAA90094.2| 382|Caenorhabditis elegans Hypothetical
protein C07E3.3 protein.
Length = 382
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 77 IHTHVDTGRVPVHAEPAQT 133
+H H + GR PV+ PAQT
Sbjct: 252 LHRHPEVGRHPVYVLPAQT 270
>U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical
protein K10D2.1b protein.
Length = 669
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 66 KYLVFTPT*IRAGFPFMPSLLKQTW 140
KYL+ TP +R+G P + + +QTW
Sbjct: 237 KYLM-TPAAVRSGKPLIKLIQRQTW 260
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
protein K10D2.1a protein.
Length = 1223
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 66 KYLVFTPT*IRAGFPFMPSLLKQTW 140
KYL+ TP +R+G P + + +QTW
Sbjct: 525 KYLM-TPAAVRSGKPLIKLIQRQTW 548
>Z82282-8|CAB05278.1| 575|Caenorhabditis elegans Hypothetical
protein T07G12.11 protein.
Length = 575
Score = 25.4 bits (53), Expect = 5.5
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -3
Query: 176 CLQIFKPYLRM-RPCLFEQAR-HEREPCPYLRGCEYQIFA*PMM 51
C QI LR + L + A HE E C R CEY P M
Sbjct: 447 CKQILSWKLRYGKQRLLDHAMTHENEKCLVCRTCEYSCSTHPQM 490
>Z81592-4|CAB04728.1| 436|Caenorhabditis elegans Hypothetical
protein T16G1.4 protein.
Length = 436
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -2
Query: 231 LSLVQLFKSNIMRILSEALPADIQAIFTNET 139
+ L++ K + ++++A AD+ A+F NE+
Sbjct: 86 VGLLEKLKESEQNVINDANEADLMALFENES 116
>Z81588-3|CAB04715.2| 377|Caenorhabditis elegans Hypothetical
protein T07D10.3 protein.
Length = 377
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 148 RKYGLNICRQCFREYAHDIGFK 213
R YGL +C C R + + GF+
Sbjct: 234 RAYGLYVCTTCQRRFRDNKGFQ 255
>Z81016-4|CAB02662.2| 1885|Caenorhabditis elegans Hypothetical
protein F21G4.6 protein.
Length = 1885
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = -2
Query: 261 FFAYIKNLLNLSLVQLFKSNI-MRILSEA 178
++ Y+ L+NL+ + L K+N +R+ +EA
Sbjct: 49 YYRYVHRLMNLTFISLEKNNADIRLAAEA 77
>Z70754-2|CAC42308.1| 764|Caenorhabditis elegans Hypothetical
protein F58E6.1b protein.
Length = 764
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 258 FAYIKNLLNLSLVQLFKSNIMR 193
F Y KN +NLS + SNI+R
Sbjct: 648 FKYSKNNINLSYSNIVASNILR 669
>Z70754-1|CAA94771.2| 966|Caenorhabditis elegans Hypothetical
protein F58E6.1a protein.
Length = 966
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 258 FAYIKNLLNLSLVQLFKSNIMR 193
F Y KN +NLS + SNI+R
Sbjct: 648 FKYSKNNINLSYSNIVASNILR 669
>U23139-15|AAK31488.1| 387|Caenorhabditis elegans Hypothetical
protein F13H8.7 protein.
Length = 387
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 103 GSRSCRACSNRHG-LIRKYGLNICRQC 180
GSR+ R G LI + LN+CRQC
Sbjct: 326 GSRTPALSRVREGVLIAELDLNLCRQC 352
>AF164113-1|AAD45535.1| 810|Caenorhabditis elegans zinc finger
protein STAT-B protein.
Length = 810
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 258 FAYIKNLLNLSLVQLFKSNIMR 193
F Y KN +NLS + SNI+R
Sbjct: 694 FKYSKNNINLSYSNIVASNILR 715
>AC025721-2|AAK29901.3| 976|Caenorhabditis elegans Hypothetical
protein Y48G8AL.10 protein.
Length = 976
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1
Query: 169 CRQCFREYAHDIGFKK 216
C CF+EYAH G +
Sbjct: 330 CAICFKEYAHQAGLSE 345
>Z35603-2|CAA84674.1| 418|Caenorhabditis elegans Hypothetical
protein T02C12.2 protein.
Length = 418
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 133 RHGLIRKYGLNICRQCFREYAHDIGFK 213
RH L+ + CR CF+E+ + G K
Sbjct: 362 RHELLPNTYTHFCRTCFQEFNYVHGVK 388
>AF026214-7|AAP68943.1| 640|Caenorhabditis elegans Hypothetical
protein F52H2.1 protein.
Length = 640
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +1
Query: 124 CSNRHGLIRKYGLNICRQCFREYAHD 201
C L G+NI R CF Y H+
Sbjct: 164 CVGYAKLFLNLGVNIVRVCFGHYGHE 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,569,449
Number of Sequences: 27780
Number of extensions: 129665
Number of successful extensions: 301
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 227290938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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