Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K17
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    74   6e-15
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    74   6e-15
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   4.4  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    24   7.8  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    24   7.8  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    24   7.8  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 74.1 bits (174), Expect = 6e-15
 Identities = 35/49 (71%), Positives = 42/49 (85%)
 Frame = +1

Query: 46  PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 192
           P  LA+V+KVLGRTGS+G  TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 74.1 bits (174), Expect = 6e-15
 Identities = 35/49 (71%), Positives = 42/49 (85%)
 Frame = +1

Query: 46  PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 192
           P  LA+V+KVLGRTGS+G  TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 237 PLSKSPGFTLRLEKGQ--DVSVADRSLHVPDDLTASLSDELHFDLSTLSL*SGAAEHFHD 64
           P+S  PG   + ++    +  + D S+   ++LTAS  +E H++L T        +   +
Sbjct: 391 PVSSQPGSDAKSQEFDFFEAKIPD-SIAKLNELTAS--NENHYELKTYDRAERLRQKIQE 447

Query: 63  TSKNVRLI 40
            S N RLI
Sbjct: 448 VSSNKRLI 455


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 216 FTLRLEKGQDVSVADRSLHVPDDLTASLSDELHFDLSTLSL*SGAAEH 73
           FT+ L   + ++V D S+  PD +   + D   FD S +S  S   EH
Sbjct: 33  FTISLLLERAIAVHDPSIISPDQIAEKIED-CGFDASVIS--STEGEH 77


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 8/36 (22%), Positives = 21/36 (58%)
 Frame = +1

Query: 37  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSR 144
           +D+P  + ++V+ +  T  +  CT+VK+    + ++
Sbjct: 123 LDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNK 158


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 243 IGPLSKSPGFTLRLEKGQDVSVADRSL 163
           + P+S  P  ++ L+   DVS AD S+
Sbjct: 168 LSPVSTFPASSISLDASSDVSAADVSV 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,337,211
Number of Sequences: 5004
Number of extensions: 23112
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)