Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K15
         (250 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   0.76 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   2.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    20   4.0  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 0.76
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 117 RCCSKLYTLSPEVLAND 167
           +  +K Y +SP++L ND
Sbjct: 6   KLANKFYRISPQILKND 22


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 2.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +3

Query: 150  EVLANDNAGTRLEVHDVIISFVLKLISLPAYKN 248
            +VL + N+G  + V +++    LKL +  ++ N
Sbjct: 1116 KVLTSSNSGQLISVENLLAQKGLKLATTASHAN 1148


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 141 LSPEVLANDNAGTRLEVHDVIISFVLKLISLPAY 242
           LSPEVL  +  G  +++    +   + L+  P +
Sbjct: 79  LSPEVLKKEPYGKPVDIWACGVILYILLVGYPPF 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,119
Number of Sequences: 438
Number of extensions: 825
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)