Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K14
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 173 1e-44
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 173 1e-44
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 26 3.0
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 7.0
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 7.0
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr... 24 9.3
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 24 9.3
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 24 9.3
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 24 9.3
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 173 bits (421), Expect = 1e-44
Identities = 79/146 (54%), Positives = 98/146 (67%)
Frame = +1
Query: 10 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYS 189
K+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+ S
Sbjct: 8 KSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSS 67
Query: 190 RIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTG 369
R+ GD+++ A+S ELPRYGIK GL N+ AAY TG Y G TE G
Sbjct: 68 RVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEG 127
Query: 370 DEYNVEPVDNGPGAFRCYLDVGLART 447
+ E +++GP F+ +LDVGL RT
Sbjct: 128 EFELTEAIEDGPRPFKVFLDVGLKRT 153
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 173 bits (421), Expect = 1e-44
Identities = 79/146 (54%), Positives = 98/146 (67%)
Frame = +1
Query: 10 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYS 189
K+ YF RYQ K++RRREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+ S
Sbjct: 8 KSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSS 67
Query: 190 RIEGDHIVCAAYSHELPRYGIKVGLTNYAAAYCTGXXXXXXXXXXXXXDSLYTGATEVTG 369
R+ GD+++ A+S ELPRYGIK GL N+ AAY TG Y G TE G
Sbjct: 68 RVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEG 127
Query: 370 DEYNVEPVDNGPGAFRCYLDVGLART 447
+ E +++GP F+ +LDVGL RT
Sbjct: 128 EFELTEAIEDGPRPFKVFLDVGLKRT 153
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 170 VTSLLD-NRTISRYFGVLYLFLSWTTRR 90
V LD N + RY+GVL+ FL + T R
Sbjct: 120 VYEFLDGNNLLCRYYGVLFHFLDFLTLR 147
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 24.6 bits (51), Expect = 7.0
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +1
Query: 157 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGIKVGLTNYAA 279
N+D + + D VC +++ + YG + G +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 24.6 bits (51), Expect = 7.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 392 TGSTLYSSPVTSVAPV*RLSKPSLCNNLLASNRPVQ 285
TGS SS V S +SKPS N L +P+Q
Sbjct: 338 TGSDKLSSHVQSETENAPVSKPSKPNTLTEDEKPLQ 373
>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -3
Query: 154 ITVQSVGTLECCICFYPGQRGVCEHSSQFFPHDAS 50
I + L C C +P +G+C+ S P D++
Sbjct: 62 IKIGDYAFLYCSNCKFPHIKGLCQICSNSHPDDSA 96
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 446 VRAKPTSK*HLNAPGPLSTGSTLYSSPVT 360
V A P N P P+ST +T +PVT
Sbjct: 180 VAASPNPSTPSNGPAPVSTTATPSRNPVT 208
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 13 NKQYFKRYQV--KFKRRREGKTDYYARKRLVVQDKNKYNTP 129
+ Y + + V ++KRR TD+ + V D++K++ P
Sbjct: 882 SSSYLEEWNVFAQYKRRESNATDFEDFRSQVGDDESKFDEP 922
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 10 KNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYN 123
K + +YQ K + E T Y RK+ +++ + K N
Sbjct: 487 KEEGELTKYQTLVKSKTEILTQLYTRKKQLLEQQGKGN 524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,488
Number of Sequences: 5004
Number of extensions: 37983
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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