Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K13
(156 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 52 1e-08
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 48 1e-07
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 27 0.44
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 1.8
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 24 2.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 24 3.1
SPAP27G11.02 |||TPR repeat protein, unknown biological role|Schi... 23 4.1
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 23 5.4
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 23 7.2
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 23 7.2
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 23 7.2
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 23 7.2
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 22 9.5
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|... 22 9.5
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 52.0 bits (119), Expect = 1e-08
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDVTS 154
DGY+ RVF IGFT + + ++T YAQ +Q+RAIR+KM +++ +S
Sbjct: 131 DGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSS 178
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 48.4 bits (110), Expect = 1e-07
Identities = 19/42 (45%), Positives = 32/42 (76%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEIL 136
DGY+ R+F IGFT++ + ++T YAQ +Q+RAI +KM +++
Sbjct: 131 DGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVI 172
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 26.6 bits (56), Expect = 0.44
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 3 TRLTDMSYVFSASVSPTRIRSGNARHATLSIPKSAQSGKKCVKSSRA 143
TR +S + SA SPT+ + + + SIPK+ + + ++S A
Sbjct: 391 TRENLLSLIPSAVSSPTKANTNKSHQRSFSIPKATKDSQTPSENSAA 437
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 24.6 bits (51), Expect = 1.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 32 FCIGFTNKDTLRQRQTCY 85
FC G NKDT+ + C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 24.2 bits (50), Expect = 2.4
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -1
Query: 123 IFFLIARTWVC*A*HVWRCLS 61
++ I +WVC +VW CL+
Sbjct: 411 VWVKIITSWVCHGLYVWSCLA 431
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 13 RICPTCFLHRFHQ 51
R C T FLHRF++
Sbjct: 1255 RYCTTSFLHRFYE 1267
>SPAP27G11.02 |||TPR repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 52 QGYAQATPDMLRSAYPSPRNQE 117
Q ++Q D AYP RNQE
Sbjct: 263 QSWSQKAVDSYYFAYPKDRNQE 284
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 35 CIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEIL 136
C+ +D A H QV A R+K EIL
Sbjct: 187 CLRHEIRDIRPPESVVMAMHQQVSAERQKRAEIL 220
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 22.6 bits (46), Expect = 7.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +3
Query: 9 LTDMSYVFSASVSPTRIRSGNARHAT--LSIPKSAQ 110
L D+ V+ + RSGN +HA L IPK Q
Sbjct: 453 LKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQ 488
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 16 ICPTCFLHRFHQQGYAQATPDMLR 87
I P FL+R++Q Y Q + ++ R
Sbjct: 1048 IVPLFFLYRYNQVYYTQTSRELKR 1071
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 121 FFPDCADLGMLSVACLALPERIL 53
+ DC M SV CL L + +L
Sbjct: 20 YLVDCTSFSMNSVTCLRLMQLLL 42
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 57 IRSGNARHATLSIPKSAQSGKKCVKSSRA 143
+RS RHA + ++ Q GK+ V + A
Sbjct: 129 LRSSQRRHALRRLKRADQFGKELVSFTNA 157
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +1
Query: 19 CPTCFLHRFHQQGYAQATPDMLRSAYPSPRNQEKNV 126
C C L + +QAT D Y + E+N+
Sbjct: 319 CTRCLLRERKRNARSQATKDACMPNYTKLKAYERNM 354
>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -3
Query: 109 CADLGM-LSVACLALPERI 56
CA G+ LS+ACL P R+
Sbjct: 339 CAASGVILSIACLIKPRRV 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 665,709
Number of Sequences: 5004
Number of extensions: 8874
Number of successful extensions: 36
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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