Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K13
(156 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 61 1e-10
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 58 7e-10
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 57 2e-09
03_02_0697 - 10487661-10488342,10490474-10490556 29 0.68
01_01_0538 - 3938389-3939727,3939828-3940203,3940299-3940516,394... 27 2.1
05_05_0050 + 21916020-21916489,21916906-21917380,21917472-21918278 25 6.3
11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373... 25 8.3
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 25 8.3
04_04_0809 - 28236216-28236679,28236776-28236899,28237049-282371... 25 8.3
03_04_0174 - 18044516-18046327 25 8.3
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 60.9 bits (141), Expect = 1e-10
Identities = 25/48 (52%), Positives = 36/48 (75%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDVTS 154
DGY+LR+FCIGFT + + ++TCYAQ +Q+R IR+KM EI+ +S
Sbjct: 131 DGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASS 178
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 58.4 bits (135), Expect = 7e-10
Identities = 24/48 (50%), Positives = 35/48 (72%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDVTS 154
D Y+LR+FCIGFT + + ++TCYAQ +Q+R IR+KM EI+ +S
Sbjct: 131 DNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASS 178
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 57.2 bits (132), Expect = 2e-09
Identities = 23/48 (47%), Positives = 35/48 (72%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDVTS 154
D Y+LR+FCIGFT + + ++TCYAQ +Q+R IR+KM EI+ ++
Sbjct: 131 DNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQAST 178
>03_02_0697 - 10487661-10488342,10490474-10490556
Length = 254
Score = 28.7 bits (61), Expect = 0.68
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = +3
Query: 3 TRLTDMSYVFSASVSPTRIRSGNARHATLSIPKSAQSGKKCVKSSR 140
T LT SA+ + I S N+ HA+ S P S KC+ SR
Sbjct: 193 TDLTVTRLSASAAKTTAAISSSNSNHASSSAPPPPPSKPKCLWQSR 238
>01_01_0538 -
3938389-3939727,3939828-3940203,3940299-3940516,
3940607-3940769,3940866-3941100,3941186-3941353
Length = 832
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 5 EADGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEI 133
+ADGY+ + T +D+LRQR+ + ++ + + E+
Sbjct: 293 DADGYISNPYLSIATARDSLRQREEAKKKQAELTELENEATEL 335
>05_05_0050 + 21916020-21916489,21916906-21917380,21917472-21918278
Length = 583
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 5 EADGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIR 115
E D ++R F +G N L R C+++ RAIR
Sbjct: 466 ETDDGLIR-FALGCENLRKLELRSCCFSEQALARAIR 501
>11_01_0485 +
3728686-3728863,3729933-3730095,3730508-3730549,
3730833-3730927,3731273-3731334,3731416-3731507,
3731587-3731722,3731818-3731904,3732430-3732519,
3732969-3733071,3733616-3733716,3733837-3733971,
3734006-3734093,3734484-3734544,3734626-3734689,
3735219-3735347
Length = 541
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = -1
Query: 156 ELVTSRVRISHIFFLIARTWVC 91
EL SR++++H+ + +RT+VC
Sbjct: 456 ELDRSRLQLNHVDAITSRTYVC 477
>09_01_0076 +
1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 27 VFSASVSPTRIRSGNARHATLSIPKSAQS 113
V S + SP R ++GN+R TLS P + Q+
Sbjct: 776 VMSGAASPPRGKNGNSRANTLS-PNARQA 803
>04_04_0809 -
28236216-28236679,28236776-28236899,28237049-28237191,
28237697-28237832,28238413-28238888,28238940-28239024
Length = 475
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 37 HRFHQQGYAQATPDMLRSAYPSPR 108
H H ++ D RS YPSPR
Sbjct: 450 HHHHHSSRPRSGSDGARSGYPSPR 473
>03_04_0174 - 18044516-18046327
Length = 603
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +1
Query: 37 HRFHQQGYAQATPDMLRSAYPSPRNQEKNV*NPH 138
H HQ + + PD +YPS R + + H
Sbjct: 13 HHHHQHAASPSPPDQPHKSYPSSRGSTSSPSSHH 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,438,745
Number of Sequences: 37544
Number of extensions: 60734
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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