Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K13
(156 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X87373-1|CAA60827.1| 264|Homo sapiens ribosomal protein S3a pro... 68 5e-12
M84711-1|AAA58487.1| 264|Homo sapiens v-fos transformation effe... 68 5e-12
M77234-1|AAA60290.1| 264|Homo sapiens ribosomal protein S3a pro... 68 5e-12
L13802-1|AAA35682.1| 264|Homo sapiens ribosmal protein small su... 68 5e-12
BC071916-1|AAH71916.1| 264|Homo sapiens ribosomal protein S3A p... 68 5e-12
BC070211-1|AAH70211.1| 264|Homo sapiens ribosomal protein S3A p... 68 5e-12
BC066926-1|AAH66926.1| 264|Homo sapiens ribosomal protein S3A p... 68 5e-12
BC030161-1|AAH30161.1| 264|Homo sapiens ribosomal protein S3A p... 68 5e-12
BC019072-1|AAH19072.1| 264|Homo sapiens ribosomal protein S3A p... 68 5e-12
BC017123-1|AAH17123.1| 264|Homo sapiens ribosomal protein S3A p... 68 5e-12
BC009404-1|AAH09404.1| 264|Homo sapiens ribosomal protein S3A p... 68 5e-12
BC009219-1|AAH09219.1| 264|Homo sapiens ribosomal protein S3A p... 68 5e-12
BC006298-1|AAH06298.1| 264|Homo sapiens ribosomal protein S3A p... 68 5e-12
BC004981-1|AAH04981.1| 264|Homo sapiens ribosomal protein S3A p... 68 5e-12
BC001708-1|AAH01708.1| 264|Homo sapiens ribosomal protein S3A p... 68 5e-12
BC000204-1|AAH00204.1| 264|Homo sapiens ribosomal protein S3A p... 68 5e-12
CR457256-1|CAG33537.1| 213|Homo sapiens THAP1 protein. 29 3.6
BC021721-1|AAH21721.1| 213|Homo sapiens THAP domain containing,... 29 3.6
AK223231-1|BAD96951.1| 213|Homo sapiens THAP domain containing,... 29 3.6
AK001339-1|BAA91635.1| 213|Homo sapiens protein ( Homo sapiens ... 29 3.6
>X87373-1|CAA60827.1| 264|Homo sapiens ribosomal protein S3a
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>M84711-1|AAA58487.1| 264|Homo sapiens v-fos transformation
effector protein protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>M77234-1|AAA60290.1| 264|Homo sapiens ribosomal protein S3a
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>L13802-1|AAA35682.1| 264|Homo sapiens ribosmal protein small
subunit protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>BC071916-1|AAH71916.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>BC070211-1|AAH70211.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>BC066926-1|AAH66926.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>BC030161-1|AAH30161.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>BC019072-1|AAH19072.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>BC017123-1|AAH17123.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>BC009404-1|AAH09404.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>BC009219-1|AAH09219.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>BC006298-1|AAH06298.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>BC004981-1|AAH04981.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>BC001708-1|AAH01708.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>BC000204-1|AAH00204.1| 264|Homo sapiens ribosomal protein S3A
protein.
Length = 264
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/46 (65%), Positives = 37/46 (80%)
Frame = +2
Query: 11 DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDV 148
DGY+LR+FC+GFT K + R+T YAQH QVR IRKKM EI+TR+V
Sbjct: 131 DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREV 176
>CR457256-1|CAG33537.1| 213|Homo sapiens THAP1 protein.
Length = 213
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 23 LRVFCI-GFTNKDTLRQRQTCYAQHTQVRAIRKKM 124
L VFC +T +DT+ QR+ + QV +RKK+
Sbjct: 129 LSVFCDHNYTVEDTMHQRKRIHQLEQQVEKLRKKL 163
>BC021721-1|AAH21721.1| 213|Homo sapiens THAP domain containing,
apoptosis associated protein 1 protein.
Length = 213
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 23 LRVFCI-GFTNKDTLRQRQTCYAQHTQVRAIRKKM 124
L VFC +T +DT+ QR+ + QV +RKK+
Sbjct: 129 LSVFCDHNYTVEDTMHQRKRIHQLEQQVEKLRKKL 163
>AK223231-1|BAD96951.1| 213|Homo sapiens THAP domain containing,
apoptosis associated protein 1 isoform 1 variant
protein.
Length = 213
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 23 LRVFCI-GFTNKDTLRQRQTCYAQHTQVRAIRKKM 124
L VFC +T +DT+ QR+ + QV +RKK+
Sbjct: 129 LSVFCDHNYTVEDTMHQRKRIHQLEQQVEKLRKKL 163
>AK001339-1|BAA91635.1| 213|Homo sapiens protein ( Homo sapiens
cDNA FLJ10477 fis, clone NT2RP2000097. ).
Length = 213
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 23 LRVFCI-GFTNKDTLRQRQTCYAQHTQVRAIRKKM 124
L VFC +T +DT+ QR+ + QV +RKK+
Sbjct: 129 LSVFCDHNYTVEDTMHQRKRIHQLEQQVEKLRKKL 163
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,390,001
Number of Sequences: 237096
Number of extensions: 308005
Number of successful extensions: 753
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 76,859,062
effective HSP length: 31
effective length of database: 69,509,086
effective search space used: 1390181720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -