Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K13
         (156 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    44   1e-05
AC024206-1|AAF36050.2|  234|Caenorhabditis elegans Hypothetical ...    27   2.4  
Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    25   9.6  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 19/47 (40%), Positives = 30/47 (63%)
 Frame = +2

Query: 11  DGYVLRVFCIGFTNKDTLRQRQTCYAQHTQVRAIRKKMCEILTRDVT 151
           DGY LRVF I FT K   + ++T Y + +++R IR +M   + ++VT
Sbjct: 129 DGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVT 175


>AC024206-1|AAF36050.2|  234|Caenorhabditis elegans Hypothetical
           protein Y74C9A.3 protein.
          Length = 234

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 154 TGHIAREDFTHFFPDCADLGMLSVACLALPERI 56
           +GH+  ED   FF  CA  G+    C+ L + +
Sbjct: 139 SGHLVDEDLVDFFKRCAK-GLKPGGCIVLKDNV 170


>Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical
           protein ZK858.1 protein.
          Length = 841

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 31  FLHRFHQQGYAQATPDMLRSAYPSPRNQEKN 123
           F+ +FH  GY+   P    +   +P ++ +N
Sbjct: 603 FIEKFHFNGYSYPPPSRYAAGTAAPSHKHRN 633


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 35   CIGFTNKDTLRQRQTCYAQHTQVRAIRKK 121
            C G +  D  R+R  C AQH  +R I K+
Sbjct: 1401 CAGGSICDYDRKRCICAAQHVAIRGICKQ 1429


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,778,220
Number of Sequences: 27780
Number of extensions: 52684
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)