Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K13
         (156 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   3.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    19   5.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   7.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    18   9.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 91  LSVACLALPERILVG 47
           L  AC++LP  +++G
Sbjct: 167 LGAACISLPPLLIMG 181


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 70  TPDMLRSAYPSPRNQEKNV*NPHARCD 150
           +P +L S      N+EK+  N H   D
Sbjct: 45  SPSLLTSQPHQDHNKEKSKNNHHCNQD 71


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 82  LRSAYPSPRNQEKNV*NPHARCDQ 153
           LR+     RNQ KNV +   R D+
Sbjct: 438 LRANVAEGRNQRKNVLDRLFRMDR 461


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 103 PRNQEKNV*NPH 138
           P+NQ KN  N H
Sbjct: 111 PKNQYKNQNNNH 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,897
Number of Sequences: 438
Number of extensions: 597
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)