Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K12
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 244 5e-66
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 244 5e-66
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 244 5e-66
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 29 0.27
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 3.3
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 26 3.3
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 26 3.3
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 26 3.3
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 26 3.3
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 4.4
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 25 7.7
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 244 bits (597), Expect = 5e-66
Identities = 109/155 (70%), Positives = 132/155 (85%)
Frame = +3
Query: 6 RGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLY 185
+GA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+Y
Sbjct: 23 KGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMY 82
Query: 186 TGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDA 365
TGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 83 TGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDT 142
Query: 366 KRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDQP 470
+TRVKLPSGAKKV+PSS RG+VGIVAGGGRID+P
Sbjct: 143 GKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKP 177
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 244 bits (597), Expect = 5e-66
Identities = 109/155 (70%), Positives = 132/155 (85%)
Frame = +3
Query: 6 RGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLY 185
+GA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+Y
Sbjct: 23 KGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMY 82
Query: 186 TGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDA 365
TGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 83 TGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDT 142
Query: 366 KRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDQP 470
+TRVKLPSGAKKV+PSS RG+VGIVAGGGRID+P
Sbjct: 143 GKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKP 177
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 244 bits (597), Expect = 5e-66
Identities = 109/155 (70%), Positives = 132/155 (85%)
Frame = +3
Query: 6 RGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLY 185
+GA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA V FR+PY ++T E F+A EG+Y
Sbjct: 23 KGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMY 82
Query: 186 TGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDA 365
TGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+ D
Sbjct: 83 TGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDT 142
Query: 366 KRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDQP 470
+TRVKLPSGAKKV+PSS RG+VGIVAGGGRID+P
Sbjct: 143 GKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKP 177
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 29.5 bits (63), Expect = 0.27
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = -2
Query: 448 PATIPTMPLLLDGNTFLAPDGSFTRVRLASGL*PITVAKLPEARASRPRSPIFSSKL 278
PAT+P N F P F +L SGL V+ P+ +P S+L
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSRL 302
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 3.3
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = -2
Query: 349 PITVAKLPEARASRPRSPIFSSKLHTIV--PSGIA---PTGITLPTSRVAFLPQ*TN*PV 185
P +A LP R+ FSSK ++ P +A IT P+S V +PQ T+
Sbjct: 272 PWFIADLPTHSRLPSRTSSFSSKHRSVTFSPPDLAILFDPSITSPSSSVGQIPQPTDHSA 331
Query: 184 *RPSGAMNSS 155
PS M+ S
Sbjct: 332 LSPSKPMSIS 341
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 360 PDCDL*LWQNCQRREPVVLDHPSFLPNY 277
PD + LW + RE + D+P FL Y
Sbjct: 86 PDYEYVLWTDESMREFIATDYPWFLTQY 113
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 3.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +2
Query: 203 LWQESNSRSWQCNACGCYA 259
LW++ CNACG YA
Sbjct: 429 LWRKDRHGQTVCNACGLYA 447
Score = 24.6 bits (51), Expect = 7.7
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 203 LWQESNSR-SWQCNACGCYA*RY 268
LW+ ++ + ++ CNACG Y +Y
Sbjct: 375 LWRRTSDKLNFLCNACGLYNKQY 397
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 3.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = +2
Query: 203 LWQESNSRSWQCNACGCY 256
LW+ S CNACG Y
Sbjct: 22 LWRRGPDNSLLCNACGLY 39
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +2
Query: 203 LWQESNSRSWQCNACGCY 256
LW+ S + CNACG Y
Sbjct: 182 LWRRDESGNPICNACGLY 199
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -3
Query: 426 LCCLMVTLFWHQMEALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLP 283
LCCL+ L ++ A + W P + Q + PVV F P
Sbjct: 246 LCCLLSPLLTAKLPAAIFMYWIPSSLFNIVQGYILKNPVVRSKLGFAP 293
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 4.4
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = -1
Query: 392 RWKLYSRTFGVRIVTYNCGKIARGASQSSSITHLFFQITHNCTFRHSTHRHYIANF*SCF 213
RW L+ GV +T++ K+ A ++ F I +HS H N CF
Sbjct: 106 RWLLHRIPGGV--ITWSTYKLFDEAETRANYPVRGFDIFMKHATKHSCH----FNILKCF 159
Query: 212 LATVNKLTSIKTFWSNEQFFARLELV 135
L + L++ SN + LELV
Sbjct: 160 LKLLMSLSAKLAVSSNSSTVSSLELV 185
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.6 bits (51), Expect = 7.7
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 250 VLCLKVQLCVIWKKRWVIEDDWLAP-LAILPQL 345
V+ L+V LC+I W + +L P L+I P+L
Sbjct: 66 VMILRVPLCIISVTLWFLWSCFLKPILSIQPKL 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,876
Number of Sequences: 5004
Number of extensions: 47495
Number of successful extensions: 133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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