Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K12
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 230 4e-61
02_05_1114 + 34218218-34218463,34219143-34219179,34219450-342196... 30 1.1
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 29 1.4
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 29 1.4
03_04_0174 - 18044516-18046327 28 4.4
11_06_0377 - 22900042-22900452,22900527-22902236 27 5.8
03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495 27 5.8
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 27 7.6
03_02_0251 - 6821612-6823405,6823738-6823878 27 7.6
01_01_0010 - 62670-62783,62877-63020,63339-63431,63665-63779,639... 27 7.6
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 230 bits (563), Expect = 4e-61
Identities = 99/155 (63%), Positives = 129/155 (83%)
Frame = +3
Query: 6 RGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLY 185
+G + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA V FR P+++K +KELF+A EG+Y
Sbjct: 24 KGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAEGMY 83
Query: 186 TGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDA 365
TGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +GDRG ARASG++A VI HNPD
Sbjct: 84 TGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDN 143
Query: 366 KRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDQP 470
+R+KLPSGAKK++PSS R M+G VAGGGR ++P
Sbjct: 144 GTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKP 178
>02_05_1114 +
34218218-34218463,34219143-34219179,34219450-34219633,
34219725-34219873,34220271-34220504,34220592-34220781,
34220863-34220988,34221386-34221485,34221598-34221957
Length = 541
Score = 29.9 bits (64), Expect = 1.1
Identities = 24/69 (34%), Positives = 30/69 (43%)
Frame = -1
Query: 470 GLVNTTTTRDNTNHASVA*W*HFFGTRWKLYSRTFGVRIVTYNCGKIARGASQSSSITHL 291
GL+NTTT N ++ S W GT K+ S TF T A A S IT L
Sbjct: 374 GLLNTTTFEPNPDYYSALLWNRLMGT--KVLSATFN---GTNKIRAYAHCARDSRGITLL 428
Query: 290 FFQITHNCT 264
++ N T
Sbjct: 429 LINLSGNNT 437
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 387 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 268
E L V+ PD + W+ C RR ++ S +P +QL
Sbjct: 431 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 470
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 387 EALLAYVWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQL 268
E L V+ PD + W+ C RR ++ S +P +QL
Sbjct: 441 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQL 480
>03_04_0174 - 18044516-18046327
Length = 603
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 329 ARGASQSSSITHLFFQITHNCTFRHSTHRHYIAN 228
+RG++ S S H THN T+ H +H HY N
Sbjct: 35 SRGSTSSPSSHH-----THNHTYYHHSHSHYNNN 63
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 216 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 383
A L+ G P+G + E VC L + D R+ A +G + G PD + RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427
>03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495
Length = 728
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 466 WSIRPPPATIPTMPLLLDGNTFLAPD 389
WS+RPP + LL GNT+ + D
Sbjct: 50 WSLRPPCILCSRLDRLLHGNTWFSED 75
>12_01_1024 -
10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 359 GRQTYASKASIWCQKSVTIKQQRHGWYCRGWW 454
G++ S CQKS + K++ GW+C W
Sbjct: 895 GQENPDSLTDYGCQKSGSTKKKVAGWWCGKVW 926
>03_02_0251 - 6821612-6823405,6823738-6823878
Length = 644
Score = 27.1 bits (57), Expect = 7.6
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Frame = +1
Query: 127 VIRTSSRRAKNCSLLQKVFILVNL-FTVARKQL*KLAM*CLWVLCLKVQL-CVIWKKRWV 300
V+R S+R A + F LV + VA +L LW+ L Q C +W R V
Sbjct: 418 VLRGSARPASGARINLASFYLVGMPVGVALAFGARLGFAGLWLGLLAAQAACAVWMARAV 477
Query: 301 IEDDWLAPLAILPQL 345
DW +A +L
Sbjct: 478 AATDWDVEVARAKEL 492
>01_01_0010 -
62670-62783,62877-63020,63339-63431,63665-63779,
63902-64152,64248-64431,64694-64950
Length = 385
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 392 RWKLYSRTFGVRIVTYNCGKIARGASQSSSITHLF 288
RW +++R G R + +C I ++ SI H F
Sbjct: 85 RWHVFARPAGKRCLVVSCNGITISRLRNGSILHRF 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,289,014
Number of Sequences: 37544
Number of extensions: 346806
Number of successful extensions: 1014
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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