Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K12
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 252 7e-68
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 36 0.015
U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop hel... 29 1.7
Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical p... 28 2.9
Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical pr... 28 3.9
X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein. 28 3.9
U41015-5|AAA82310.1| 166|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical pr... 27 9.0
U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like pr... 27 9.0
U49941-1|AAB53872.1| 609|Caenorhabditis elegans Hypothetical pr... 27 9.0
U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and en... 27 9.0
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 27 9.0
AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type tra... 27 9.0
AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type tra... 27 9.0
AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a... 27 9.0
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 27 9.0
AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal... 27 9.0
AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like ... 27 9.0
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 252 bits (618), Expect = 7e-68
Identities = 107/155 (69%), Positives = 134/155 (86%)
Frame = +3
Query: 6 RGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLY 185
+GA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA++ FRDPYK+KT K +A EG++
Sbjct: 24 KGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEGMH 83
Query: 186 TGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDA 365
TGQF++CG KA +++GN++PVG +PEGT +CN+E K GDRG +ARASGN+ATVI HNPD
Sbjct: 84 TGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDT 143
Query: 366 KRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDQP 470
K+TR++LPSGAKKV+ S NR M+G+VAGGGR D+P
Sbjct: 144 KKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKP 178
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 35.9 bits (79), Expect = 0.015
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 231 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLP 389
GN P+G++ GT++ ++E D +A+G AT++ H D T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211
>U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop helix
protein 14 protein.
Length = 246
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -2
Query: 349 PITVAKLPEARASRPRSPIFSSKLHTIVPSGIAPTGI 239
PI+ +P R SRP P+ S +H++ P + T +
Sbjct: 47 PISTLLVPPIRLSRPAFPLTISLIHSVHPHSLLATTV 83
>Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 48 HGYIKGVVKDIIHDPGRGAPLAVVHFR 128
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 48 HGYIKGVVKDIIHDPGRGAPLAVVHFR 128
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 345 IGHNPDAKRTRVKLPSGAKKVL 410
IGH D +RTR LP+G KKVL
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVL 77
>Z68221-5|CAJ30235.1| 416|Caenorhabditis elegans Hypothetical
protein W09C2.1b protein.
Length = 416
Score = 27.9 bits (59), Expect = 3.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 203 LWQESNSRSWQCNACGCY 256
LW+ S ++ CNACG Y
Sbjct: 227 LWRRDGSGNYLCNACGLY 244
>Z68221-4|CAJ30234.1| 488|Caenorhabditis elegans Hypothetical
protein W09C2.1a protein.
Length = 488
Score = 27.9 bits (59), Expect = 3.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 203 LWQESNSRSWQCNACGCY 256
LW+ S ++ CNACG Y
Sbjct: 299 LWRRDGSGNYLCNACGLY 316
>X57834-1|CAA40967.1| 416|Caenorhabditis elegans elt-1 protein.
Length = 416
Score = 27.9 bits (59), Expect = 3.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 203 LWQESNSRSWQCNACGCY 256
LW+ S ++ CNACG Y
Sbjct: 227 LWRRDGSGNYLCNACGLY 244
>U41015-5|AAA82310.1| 166|Caenorhabditis elegans Hypothetical
protein F20B6.1 protein.
Length = 166
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1
Query: 359 RIVTYNCGKIARGASQSSSITHLFFQITHNCTFRHSTHRHY 237
R+ T +C +I G ITH ++ T + S HY
Sbjct: 40 RVYTESCTEIEIGGKSKDKITHRVLKVVVKATGQESKLNHY 80
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -2
Query: 328 PEARAS--RPRSPIFSSKLHTIVPSGIAPTG 242
P R+S RPRSP +S++ TIV S +PTG
Sbjct: 535 PSRRSSSIRPRSPTSTSQMSTIVRSR-SPTG 564
>Z68121-1|CAA92204.2| 174|Caenorhabditis elegans Hypothetical
protein T24D3.1 protein.
Length = 174
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 146 DAQRTVHCSRRSLYWSICLLWQESNSRSW-QCNACGCYA*RYN 271
D +++ CS S+ +I W+ S+ QCNAC Y +YN
Sbjct: 107 DNKKSFQCSNCSVTETI--RWRNIRSKEGIQCNACFIYQRKYN 147
>U80450-5|AAB37830.1| 587|Caenorhabditis elegans Kinesin-like
protein protein 15 protein.
Length = 587
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 370 RLASGL*PITVAKLPEARASRPRSPIFSSKLHTIVPSGIAPTGITL 233
R SGL T+ P+ R +P T +P AP GIT+
Sbjct: 5 RRRSGLFRSTIGATPKITRGRAAAPSTKEANSTTIPRQSAPGGITI 50
>U49941-1|AAB53872.1| 609|Caenorhabditis elegans Hypothetical
protein K10B3.5 protein.
Length = 609
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 281 FGRKDG*SRTTGSRLWQFCHSYRSQSGRQTYASKASIWCQKSVTI 415
+G+K R +G +W F S+ +QSG+ T +K + +K +
Sbjct: 395 YGKKSSQRRISGM-IWSFVSSHLAQSGKLTGTTKDNETIKKEAKV 438
>U00044-5|AAK93857.1| 174|Caenorhabditis elegans Mesoderm and
endoderm determinationprotein 2 protein.
Length = 174
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 146 DAQRTVHCSRRSLYWSICLLWQESNSRSW-QCNACGCYA*RYN 271
D +++ CS S+ +I W+ S+ QCNAC Y +YN
Sbjct: 107 DNKKSFQCSNCSVTETI--RWRNIRSKEGIQCNACFIYQRKYN 147
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Frame = -2
Query: 328 PEARAS--RPRSPIFSSKLHTIVPSGIAPTG 242
P R+S RPRSP +S++ TIV S +PTG
Sbjct: 535 PSRRSSSIRPRSPTSTSQMSTIVRSR-SPTG 564
>AF302238-1|AAG21386.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 146 DAQRTVHCSRRSLYWSICLLWQESNSRSW-QCNACGCYA*RYN 271
D +++ CS S+ +I W+ S+ QCNAC Y +YN
Sbjct: 107 DNKKSFQCSNCSVTETI--RWRNIRSKEGIQCNACFIYQRKYN 147
>AF302237-1|AAG21385.1| 174|Caenorhabditis elegans GATA-type
transcription factor protein.
Length = 174
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 146 DAQRTVHCSRRSLYWSICLLWQESNSRSW-QCNACGCYA*RYN 271
D +++ CS S+ +I W+ S+ QCNAC Y +YN
Sbjct: 107 DNKKSFQCSNCSVTETI--RWRNIRSKEGIQCNACFIYQRKYN 147
>AF216968-1|AAF60253.2| 658|Caenorhabditis elegans semaphorin-2a
protein.
Length = 658
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 116 CPFP*SVQVQDAQRTVHCSRRSLYWSICLLWQESNSRSWQCNA 244
C P SV + + C + Y + +W +SN ++ QC A
Sbjct: 610 CARPTSVAEYRSCQREWCKKADAYKAALNIWSDSNKKNVQCKA 652
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 113 CCPFP*SVQVQDAQRTVHCSRRSLYWSICLL 205
CCP Q +D T+H RR+LY+S L+
Sbjct: 208 CCP----EQYEDITFTLHLRRRTLYYSFNLI 234
>AC025726-1|AAK73921.1| 658|Caenorhabditis elegans Male abnormal
protein 20, isoform a protein.
Length = 658
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 116 CPFP*SVQVQDAQRTVHCSRRSLYWSICLLWQESNSRSWQCNA 244
C P SV + + C + Y + +W +SN ++ QC A
Sbjct: 610 CARPTSVAEYRSCQREWCKKADAYKAALNIWSDSNKKNVQCKA 652
>AB032080-1|BAA92263.2| 587|Caenorhabditis elegans kinesin like
protein-15 protein.
Length = 587
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -2
Query: 370 RLASGL*PITVAKLPEARASRPRSPIFSSKLHTIVPSGIAPTGITL 233
R SGL T+ P+ R +P T +P AP GIT+
Sbjct: 5 RRRSGLFRSTIGATPKITRGRAAAPSTKEANSTTIPRQSAPGGITI 50
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,495,752
Number of Sequences: 27780
Number of extensions: 287659
Number of successful extensions: 734
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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