Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K12
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.6  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   2.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   3.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.0  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 369 VWRPDCDL*LWQNCQRREPVVLDHPSFLPNYTQLYLQA*HPQAL--HCQLLELLSCHSK 199
           +WRPDC    ++N ++    V  H   +PN+   YL   H + L    +L  +LSC  K
Sbjct: 87  IWRPDC---FFKNAKK----VTFHEMSIPNH---YLWLYHDKTLLYMSKLTLVLSCAMK 135


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 345 IGHNPDAKRTRVKLPSGAKKVL 410
           IG+  + K+TR  LP+G +KVL
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVL 77


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
 Frame = -2

Query: 391 DGSFTRVRLASGL*PITVAKLPEARASR-PRSPIFSSKLHTIVPSGIAPTGITLPTSRVA 215
           DG+     L   L  I     P  +A R P   ++       VP G   TGI  P   V 
Sbjct: 220 DGNADGKTLIEALDAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVT 279

Query: 214 FLP 206
           F P
Sbjct: 280 FAP 282


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 167 CSRRSLYWSICLL 205
           CS    YW +C+L
Sbjct: 84  CSSFRFYWDLCML 96


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 167 CSRRSLYWSICLL 205
           CS    YW +C+L
Sbjct: 84  CSSFRFYWDLCML 96


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 167 CSRRSLYWSICLL 205
           CS    YW +C+L
Sbjct: 84  CSSFRFYWDLCML 96


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -3

Query: 459 YDHHPRQYQP 430
           + HHP QY P
Sbjct: 319 HQHHPSQYHP 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,097
Number of Sequences: 438
Number of extensions: 3424
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)