Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K10
         (290 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    31   0.045
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...    30   0.060
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    25   2.2  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   3.0  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    24   3.9  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    24   3.9  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    23   6.9  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    23   6.9  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    23   9.1  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 30.7 bits (66), Expect = 0.045
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +1

Query: 235 VKKLRRAKKEAPPNEKP 285
           ++KLR+AK EAP NEKP
Sbjct: 66  IRKLRKAKSEAPLNEKP 82



 Score = 30.3 bits (65), Expect = 0.060
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 120 GVDLDQLLDMPNEQLMELMH 179
           GV+L+QLLD+  EQL++L H
Sbjct: 28  GVELEQLLDLSAEQLVDLFH 47


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score = 30.3 bits (65), Expect = 0.060
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 120 GVDLDQLLDMPNEQLMELMH 179
           GV+L+QLLD+  EQL++L H
Sbjct: 27  GVELEQLLDLSAEQLVDLFH 46



 Score = 30.3 bits (65), Expect = 0.060
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = +1

Query: 235 VKKLRRAKKEAPPNEKP 285
           ++KLR+AK EAP NEKP
Sbjct: 65  IRKLRKAKTEAPLNEKP 81


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -1

Query: 290 ISGFSF--GGASFLARRNFFTSAIGLRLSQKREPPASARMHQFHEL 159
           ++GF F  G ASFL    +   A+ L  S+      SAR+   H L
Sbjct: 293 LAGFGFLPGDASFLKSEFWGQKAVALNSSRSVSLSLSARIGALHSL 338


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 119 SEGKLPECTFFLKSFIDLSHVSDF 48
           SEG L + T  LKS+ D S   DF
Sbjct: 443 SEGWLEDQTILLKSYFDTSFSLDF 466


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 19  ISFFLLVLSKKSETWLRSMKLLRKNV 96
           + FF L L+   +TW+ S++ L   V
Sbjct: 183 LMFFFLTLNNTDKTWIHSIRSLNPPV 208


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 270 RCLLLSTAQFLYQCHWFALE 211
           + L+L  A+F Y C+W  L+
Sbjct: 210 KILILDVARFKYPCYWVDLK 229


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 120 GVDLDQLLDMPNEQLMELMH 179
           G+D+D L D+ NE+   ++H
Sbjct: 26  GLDIDDLWDIYNEKTRRMIH 45


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +1

Query: 109 LPSEESI*I-NS*TCPMNNSWN*CMRALAGG--SRFWLKRKPMALVKKLRRAKKEAPPNE 279
           LP E  I + N+        W  C   +A G  S F++K +P+    +   AKK+   +E
Sbjct: 534 LPQELQIRVKNTYASAFRVIWIFCTVVMAIGFASIFFIKSRPLISNAQSVPAKKKGDSDE 593

Query: 280 KP 285
           KP
Sbjct: 594 KP 595


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 285 GFLIWRCLLLSTAQF 241
           GFL W C+L++  QF
Sbjct: 419 GFLAWICVLVAYLQF 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,163,474
Number of Sequences: 5004
Number of extensions: 19550
Number of successful extensions: 59
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)