Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K10
(290 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449... 49 7e-07
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 31 0.16
02_05_0611 + 30344637-30344652,30344743-30344883,30345258-303455... 31 0.16
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 30 0.27
10_08_0165 + 15356748-15356811,15357113-15357186,15357311-153573... 27 2.5
05_01_0197 - 1417672-1417899,1418921-1418974,1419267-1419552,142... 27 3.3
05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524 26 5.8
04_04_1576 - 34551095-34552645 26 5.8
01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496 26 5.8
09_04_0634 - 19132916-19134033,19134716-19135915,19136002-191361... 25 7.7
>07_01_0604 -
4491884-4491993,4493030-4493225,4494269-4494326,
4494459-4494613,4495092-4495115,4495377-4495489,
4499943-4500129
Length = 280
Score = 48.8 bits (111), Expect = 7e-07
Identities = 21/26 (80%), Positives = 24/26 (92%)
Frame = +1
Query: 211 LKRKPMALVKKLRRAKKEAPPNEKPE 288
LKRKPMAL+KKLR+AKK+AP EKPE
Sbjct: 165 LKRKPMALIKKLRKAKKDAPAGEKPE 190
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 120 GVDLDQLLDMPNEQLMEL 173
GVDLD LLDM + L++L
Sbjct: 135 GVDLDALLDMSTDDLVQL 152
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +1
Query: 211 LKRKPMALVKKLRRA 255
LKRKPMAL+KKLR+A
Sbjct: 293 LKRKPMALIKKLRKA 307
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 120 GVDLDQLLDMPNEQLMEL 173
GVDLD LLDM + L++L
Sbjct: 263 GVDLDALLDMSTDDLVQL 280
>02_05_0611 +
30344637-30344652,30344743-30344883,30345258-30345572,
30345907-30346053,30346446-30346543,30346719-30346805,
30346870-30347080,30347589-30347674
Length = 366
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 34 LVLSKKSETWLRSMKLLRKNVHSGSLPSEE 123
L+ SKK ET L++ K +KN+ GS P EE
Sbjct: 86 LLTSKKDETKLKNKKKSKKNLKEGSNPVEE 115
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 30.3 bits (65), Expect = 0.27
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -1
Query: 278 SFGGASFLARRNFFTSAIGLRLSQKREPPASARM----HQFHELFIGHV*ELI 132
+ GG +F+ T + RLS PP+S R+ + HELF H+ E++
Sbjct: 613 TMGGGNFVVPAQCVTDFLSNRLSVTTLPPSSYRLGVRPSKLHELFPSHITEVL 665
>10_08_0165 +
15356748-15356811,15357113-15357186,15357311-15357394,
15357508-15357602,15357737-15357790,15357791-15357896,
15358236-15358277,15358585-15358674,15358788-15358984,
15359355-15359413,15360166-15362252
Length = 983
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = -2
Query: 178 CINSMSCSLGMSRS*SKSTPRKVNFLNVRFF---LRVSSTSAMFLI 50
CI S+S S+G++R+ S + +NF V+F LR +SA ++
Sbjct: 234 CIRSISESVGLNRNWSMTVETMINFSCVQFLSCSLRAFISSAKLVL 279
>05_01_0197 -
1417672-1417899,1418921-1418974,1419267-1419552,
1421768-1422291
Length = 363
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +1
Query: 187 LAGGSR---FWLKRKPMALVKKLRRAKKEAPPNEK 282
L GG+ WL R+P L+ K RR + AP ++
Sbjct: 130 LRGGNEEGELWLWRRPSRLLSKWRRGRSWAPEKDR 164
>05_01_0288 + 2253005-2253137,2253269-2253398,2253504-2254524
Length = 427
Score = 25.8 bits (54), Expect = 5.8
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = +1
Query: 64 LRSMKLLRKNVHSGSLPSEESI*INS*TCPMNNSWN*CMRALAGGSRFWLKRKPMALVKK 243
LR + LR ++ G+ EE I + N W+ L G + +K + +KK
Sbjct: 55 LRWINYLRPDLKRGAFSQEEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKK 114
Query: 244 LRRAKKEAPPNEKP 285
R K P KP
Sbjct: 115 KLRQKGIDPNTHKP 128
>04_04_1576 - 34551095-34552645
Length = 516
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 184 ALAGGSRFWLKRKPMALVKKLRRAKKEAPPNE 279
A+AG ++ R+ +AL K+LRRA PPNE
Sbjct: 112 AIAGLTQGGQPREALALFKRLRRA--GLPPNE 141
>01_02_0017 - 10215995-10217018,10217120-10217249,10217364-10217496
Length = 428
Score = 25.8 bits (54), Expect = 5.8
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = +1
Query: 64 LRSMKLLRKNVHSGSLPSEESI*INS*TCPMNNSWN*CMRALAGGSRFWLKRKPMALVKK 243
LR + LR ++ G+ EE I + N W+ L G + +K + +KK
Sbjct: 55 LRWINYLRPDLKRGAFSQEEEDLIVELHAVLGNRWSQIATRLPGRTDNEIKNLWNSCIKK 114
Query: 244 LRRAKKEAPPNEKP 285
R K P KP
Sbjct: 115 KLRQKGIDPNTHKP 128
>09_04_0634 -
19132916-19134033,19134716-19135915,19136002-19136106,
19136273-19136315,19137622-19137740,19138074-19138172,
19138264-19138480
Length = 966
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +3
Query: 39 SVKEIRNMAEVDEXXXXXXXXXXXXXXGVDLDQLLDMPN 155
S++EI+N+ V GV DQL PN
Sbjct: 233 SIEEIKNLDSVSPAASVAANEISVEMDGVSKDQLSGQPN 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,031,983
Number of Sequences: 37544
Number of extensions: 141370
Number of successful extensions: 289
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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