Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K09
         (151 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   1.8  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    23   4.1  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    22   9.6  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    22   9.6  

>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 81  ERIYDS*VSLIHRTHII*KKPRLIIIV 1
           ER  DS + LIH  H++ + P L II+
Sbjct: 762 ERSIDSDLLLIHVLHLLKQHPHLKIII 788


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 67  FMSEPYSSHTHNIEEATVNY 8
           F  EP SS  +++ E+++NY
Sbjct: 428 FTQEPPSSSLYSLSESSINY 447


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 48  E*GSLMNHKYALMRYGTSMKAIVLN 122
           E  SL   K+    YGTS  A +LN
Sbjct: 13  ESNSLRPSKWLFQSYGTSSSANILN 37


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = +2

Query: 14  NRGFFYIMCVR*IRLTHES*IRSNAIRHINESDSAKYLLFQYTN 145
           ++G+F+++     ++     I S +I+ I  S   ++L+F  T+
Sbjct: 185 SKGWFHVIDASTTKIRSSHRITSQSIKQIRLSFCKRFLIFNSTD 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,483
Number of Sequences: 5004
Number of extensions: 7001
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 30
effective length of database: 2,212,358
effective search space used: 42034802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)