Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K09
         (151 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   0.44 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   1.8  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    20   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   5.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     19   5.4  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 0.44
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 90  YGTSMKAIVLNIYYSSILT 146
           YG ++  +  N+YYS +L+
Sbjct: 257 YGIALSPVTNNLYYSPLLS 275


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 90  YGTSMKAIVLNIYYSS 137
           YG ++  +  N+YY+S
Sbjct: 253 YGMALSPVTHNLYYNS 268


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +3

Query: 90  YGTSMKAIVLNIYYSSI 140
           +G ++  +  N+YYS++
Sbjct: 252 FGMALSPLTQNLYYSAL 268


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -1

Query: 58  EPYSSHTHNI 29
           +PY  H HN+
Sbjct: 107 QPYRPHPHNL 116


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = -1

Query: 58  EPYSSHTHNI 29
           +PY  H HN+
Sbjct: 107 QPYRPHPHNL 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,843
Number of Sequences: 438
Number of extensions: 454
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2530857
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)