Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K07
(326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 125 2e-30
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 66 1e-12
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 40 7e-05
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 27 0.54
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 27 0.95
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 2.9
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 25 2.9
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 24 6.7
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 24 6.7
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 23 8.8
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 23 8.8
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 23 8.8
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 23 8.8
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 125 bits (301), Expect = 2e-30
Identities = 57/107 (53%), Positives = 75/107 (70%)
Frame = +1
Query: 4 RGDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANT 183
R D+++++ + PW+ DP FF+ +KISA+ALLKM+ H G LEVMG + GKV+ +
Sbjct: 10 RFDEEKERAKIRESPWKHDPEFFRSVKISAVALLKMLRHVSQGMPLEVMGYVQGKVEGAS 69
Query: 184 MIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEASKQVGRHENAIGW 324
+I++DSFALPVEGTETRVNA +A EY Y K V RHEN IGW
Sbjct: 70 LIILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGW 116
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 66.1 bits (154), Expect = 1e-12
Identities = 37/83 (44%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +1
Query: 79 IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 255
+ IS+LALLKM+ H R G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 30 VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPV 89
Query: 256 YEYMTAYIEASKQVGRHENAIGW 324
++ ++ KQ GR E +GW
Sbjct: 90 FQ--KNMMDMLKQTGRPEMVVGW 110
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 40.3 bits (90), Expect = 7e-05
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +1
Query: 73 KDIKISALALLKMV-MHARS--GGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNA 243
+ + + L LL V + RS G V+G+LLG+ + + + V +S+A+P E E +
Sbjct: 15 QQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASV 74
Query: 244 QAQAYEYMTAYIEASKQVGRHENAIGW 324
+ +M + E K++ +E +GW
Sbjct: 75 WFLDHNFMESMNEMFKKINANEKLVGW 101
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 27.5 bits (58), Expect = 0.54
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 318 NGILMTAHLF*CF-NICCHIFVSLSLCIDTSFSTFYRESKRIHNNHSVCVN 169
NG + + +F F ++ F + TSFS SK ++NH CVN
Sbjct: 375 NGYKLESFIFDLFPSVSVENFGCFQVPRRTSFSPLKNSSKSPNDNHETCVN 425
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 26.6 bits (56), Expect = 0.95
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 107 FKSARAEILISLKKCGSFSHGFAARISCCCFL 12
FK A A+ +I L+ S+SH F + CC L
Sbjct: 344 FKQA-ADAIIELEDLNSWSHAFYRYFAGCCLL 374
>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 2.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 84 NLGSRTFENGNARPIW 131
+L +RTFENGN P+W
Sbjct: 142 SLPARTFENGNI-PVW 156
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 25.0 bits (52), Expect = 2.9
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = -3
Query: 105 QKCESRDFDIFEKMWIFLPW 46
Q+ +++ ++EK WIF+P+
Sbjct: 79 QRHNKQEYVVYEKNWIFVPY 98
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 23.8 bits (49), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 24 TRYPCCEAMGERSTFFQRYQNLGS-RTFENG 113
+R P A + TF+Q Y+N+ T ENG
Sbjct: 349 SRNPYTAAQPRKHTFYQMYENIEKFFTTENG 379
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 23.8 bits (49), Expect = 6.7
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -3
Query: 237 DTSFSTFYRESKRIHNNHSVCVNFTQEQSHNF*SSTRS--GVHYHFQKC 97
D+++S + KR H + + QSH SST S V Y +C
Sbjct: 425 DSNYSDHHNNDKRAHVSRRHSTSRKIAQSHTGSSSTSSAANVRYRCTEC 473
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 23.4 bits (48), Expect = 8.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 268 SYIRKLELVH*HEFQYLLQGEQTNP*QS 185
SY +E +H HE ++ +GE P QS
Sbjct: 311 SYHPSVESLHAHEIRFGFKGEIITPSQS 338
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 23.4 bits (48), Expect = 8.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 201 RIHNNHSVCVNFTQEQSHNF*SSTRSGVHYH 109
R H SVCVN + + S N T + +H H
Sbjct: 943 RWHLVKSVCVNNSADTSTNLWLGTCTDIHDH 973
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 23.4 bits (48), Expect = 8.8
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -3
Query: 255 SLSLCIDTSFSTFYRESKRIHNNHSVCVNFTQEQSHNF*SSTRSGVHYHFQ 103
+LS DTS+ E R + N + + S +GVH H+Q
Sbjct: 403 ALSTLSDTSYEKTLNEMNRFRKAVTDMYNACDSDALVYEISRANGVHLHWQ 453
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 23.4 bits (48), Expect = 8.8
Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
Frame = +2
Query: 53 RKIH-IFSKISKSRLSHF 103
RK H IFSKI+K HF
Sbjct: 132 RKAHSIFSKINKRHFDHF 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,526
Number of Sequences: 5004
Number of extensions: 26741
Number of successful extensions: 92
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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