Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K07
(326 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 136 3e-33
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 71 2e-13
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 71 2e-13
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 39 0.001
08_01_0495 - 4309816-4310592 30 0.37
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 28 2.0
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 27 4.6
05_02_0105 + 6644264-6644344,6645573-6646097,6646185-6646410,664... 26 6.1
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 26 6.1
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 26 6.1
03_01_0460 - 3537608-3538228,3538457-3538669,3539938-3540051 26 6.1
03_01_0291 - 2250349-2250966,2251062-2251444,2251604-2251981,225... 26 6.1
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518 26 8.0
04_04_0844 - 28637393-28638118,28638206-28638283,28638431-286386... 26 8.0
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600... 26 8.0
03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639... 26 8.0
02_05_0077 + 25645730-25645993,25647172-25647648,25648027-256482... 26 8.0
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 136 bits (330), Expect = 3e-33
Identities = 63/101 (62%), Positives = 77/101 (76%)
Frame = +1
Query: 4 RGDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANT 183
R D+ Q + KPW DPH F+ KISALALLKMV+HAR+GGT+EVMGL+ GK + +
Sbjct: 27 RYDEAAQARVQQEKPWANDPHPFRRAKISALALLKMVVHARAGGTIEVMGLMQGKCEGDA 86
Query: 184 MIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEASKQVGRH 306
++VMD+FALPVEGTETRVNAQA AYEYM Y +KQ+G H
Sbjct: 87 IVVMDAFALPVEGTETRVNAQADAYEYMVEYSTINKQIGSH 127
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 71.3 bits (167), Expect = 2e-13
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +1
Query: 73 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 249
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P G T V+ +A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSG--TGVSVEA 84
Query: 250 QAYEYMTAYIEASKQVGRHENAIGW 324
+ + T ++ KQ GR E +GW
Sbjct: 85 VDHVFQTNMLDMLKQTGRPEMVVGW 109
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 71.3 bits (167), Expect = 2e-13
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
Frame = +1
Query: 73 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 249
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P G T V+ +A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSG--TGVSVEA 84
Query: 250 QAYEYMTAYIEASKQVGRHENAIGW 324
+ + T ++ KQ GR E +GW
Sbjct: 85 VDHVFQTNMLDMLKQTGRPEMVVGW 109
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +1
Query: 85 ISALALLKMVMHARSGGTLEVMGLLLG-KVDANTMIVMDSFALP 213
+S LALLK+++HA + MG++LG +VD ++ V+D+F LP
Sbjct: 28 VSPLALLKILVHAARDSPVAAMGVILGEEVDGFSVRVVDAFPLP 71
>08_01_0495 - 4309816-4310592
Length = 258
Score = 30.3 bits (65), Expect = 0.37
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 21 TTRYPCCEAMGERSTFFQRYQNLGSRTFENG 113
TTR+ C +A G++ F QR++ L RTF G
Sbjct: 23 TTRHGCLQASGDQQDFSQRFR-LARRTFHLG 52
>03_05_0728 -
27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/65 (23%), Positives = 34/65 (52%)
Frame = -3
Query: 210 ESKRIHNNHSVCVNFTQEQSHNF*SSTRSGVHYHFQKCESRDFDIFEKMWIFLPWLRSKD 31
ES +I++ +C+N+T E+ + + H K E ++ E W ++ ++ ++D
Sbjct: 412 ESFKINSFEQLCINYTNEK-------LQQHFNQHVFKMEQEEYTREEINWSYIEFVDNQD 464
Query: 30 ILLLL 16
+L L+
Sbjct: 465 VLDLI 469
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 26.6 bits (56), Expect = 4.6
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 148 MGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEASKQVGRHE 309
+G G+ N M+++D A +EG + QAQA + I+ Q G+ +
Sbjct: 748 IGAAAGRSLENQMLLLDGQAKAMEGLNHLYSFQAQALQESRETIQKLAQFGQQQ 801
>05_02_0105 +
6644264-6644344,6645573-6646097,6646185-6646410,
6646498-6646875,6647035-6647417,6647513-6648130
Length = 736
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -1
Query: 284 ASIYAVIYS*A*ACALTRVSVPSTGRANESITIIVFASTLPRSNPITSKV---PPDRAC 117
ASI + S A A ++ V VPS G N SI + T+P S+ I + P++ C
Sbjct: 644 ASILRLANSLASAQSVASVEVPSVGDPNASIWKRIEDLTIPASDKIELAIFLTKPEQEC 702
>04_01_0150 +
1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 236 TRVSVPSTGRANESITIIVFASTLPRSNPITSKVPPDRACIT 111
T ++ P T RA T + S S P ++V RAC+T
Sbjct: 599 TPIAKPGTVRAASPCTPVKSTSQSQLSKPAVTEVDSCRACVT 640
>04_01_0097 - 998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -1
Query: 284 ASIYAVIYS*A*ACALTRVSVPSTGRANESITIIVFASTLPRSNPITSKV---PPDRAC 117
ASI + S A A ++ V VPS G N SI + T+P S+ I + P++ C
Sbjct: 1064 ASILRLANSLASAQSVASVEVPSVGDPNASIWKRIEDLTIPASDKIELAIFLTKPEQEC 1122
>03_01_0460 - 3537608-3538228,3538457-3538669,3539938-3540051
Length = 315
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 41 RSHGRKIHIFSKISKSRL 94
RSHGRKIH+ K SR+
Sbjct: 143 RSHGRKIHVSVKQETSRV 160
>03_01_0291 -
2250349-2250966,2251062-2251444,2251604-2251981,
2252147-2252294,2252382-2252906,2253990-2254112,
2254151-2254205,2254510-2254640
Length = 786
Score = 26.2 bits (55), Expect = 6.1
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -1
Query: 284 ASIYAVIYS*A*ACALTRVSVPSTGRANESITIIVFASTLPRSNPITSKV---PPDRAC 117
ASI + S A A ++ V VPS G N SI + T+P S+ I + P++ C
Sbjct: 694 ASILRLANSLASAQSVASVEVPSVGDPNASIWKRIEDLTIPASDKIELAIFLTKPEQEC 752
>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
Length = 783
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 212 GRANESITIIVFASTLPRSNPITSKVPPDRACIT 111
GRAN + +I + S P KVP D AC++
Sbjct: 265 GRANRGVPVIHDWAIRNGSCPEGKKVPKDYACVS 298
>04_04_0844 -
28637393-28638118,28638206-28638283,28638431-28638607,
28639124-28639537
Length = 464
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 138 SSTRSGVHYHFQKCESRDFDIFEKMWIFLPWLRSKD 31
S RSG H+H C S + + + +P SKD
Sbjct: 278 SRRRSGSHHHHSSCSSMTSEQKSRSYATMPESPSKD 313
>04_04_0590 +
26457514-26457801,26458849-26459325,26459817-26460027,
26460219-26460376,26460461-26460531,26460707-26460812,
26460880-26460966,26461591-26462148,26462245-26462308,
26463352-26463485,26463568-26463621,26464321-26464417,
26465620-26465825,26465901-26465984,26466265-26466330,
26466883-26466956,26467664-26467751,26467830-26467928
Length = 973
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 120 RPIWWNFRSYGIAPG*S*RKHYDCYGFVCSPCRR 221
RP W + RSY IA G RK ++ Y VC+ R
Sbjct: 266 RPAWEDLRSYLIARG---RKRFEVY--VCTMAER 294
>03_02_0205 +
6389343-6389609,6390418-6390486,6390662-6390757,
6391120-6391244,6391331-6391483,6392863-6392992,
6393122-6393282,6393660-6393702,6393869-6394042,
6394471-6394525,6394567-6394746,6396234-6396339,
6396448-6396506,6397419-6397541,6397825-6397919
Length = 611
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 188 IIVFASTLPRSNPITSKVPPDRACITIFKSARAE 87
+IV A+ P NP +S PP RA ++ + R +
Sbjct: 5 LIVPANPNPTPNPTSSLRPPSRAASSVLRFPRRD 38
>02_05_0077 +
25645730-25645993,25647172-25647648,25648027-25648237,
25648407-25648564,25648641-25648711,25648829-25648934,
25649008-25649094,25649701-25650252,25650337-25650403,
25650971-25651104,25651175-25651228,25651376-25651472,
25652007-25652212,25652287-25652367,25652543-25652608,
25653025-25653098,25653766-25653871
Length = 936
Score = 25.8 bits (54), Expect = 8.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +3
Query: 120 RPIWWNFRSYGIAPG*S*RKHYDCYGFVCSPCRR 221
RP W + RSY IA G RK ++ Y VC+ R
Sbjct: 258 RPAWEDLRSYLIARG---RKRFEVY--VCTMAER 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,236,158
Number of Sequences: 37544
Number of extensions: 172158
Number of successful extensions: 404
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -