Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K07
(326 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR541678-1|CAG46479.1| 334|Homo sapiens COPS5 protein. 186 1e-47
BC007272-1|AAH07272.1| 334|Homo sapiens COP9 constitutive photo... 186 1e-47
BC001859-1|AAH01859.1| 334|Homo sapiens COP9 constitutive photo... 186 1e-47
BC001187-1|AAH01187.1| 334|Homo sapiens COP9 constitutive photo... 186 1e-47
U65928-1|AAB16847.1| 334|Homo sapiens Jun activation domain bin... 184 6e-47
U70734-1|AAD03468.1| 334|Homo sapiens 38 kDa Mov34 homolog prot... 175 3e-44
AB209134-1|BAD92371.1| 276|Homo sapiens COP9 signalosome subuni... 154 7e-38
U86782-1|AAC51866.1| 310|Homo sapiens 26S proteasome-associated... 69 4e-12
BC066336-1|AAH66336.1| 310|Homo sapiens proteasome (prosome, ma... 69 4e-12
AC009299-2|AAX88940.1| 154|Homo sapiens unknown protein. 69 4e-12
D50063-1|BAA08780.1| 324|Homo sapiens proteasome subunit p40 / ... 36 0.022
BC012606-1|AAH12606.1| 324|Homo sapiens proteasome (prosome, ma... 36 0.022
BC000338-1|AAH00338.1| 326|Homo sapiens PSMD7 protein protein. 36 0.022
BX470111-2|CAO03574.1| 226|Homo sapiens BRCA1/BRCA2-containing ... 32 0.36
AK131343-1|BAD18499.1| 133|Homo sapiens protein ( Homo sapiens ... 29 3.3
BX538271-1|CAD98078.1| 283|Homo sapiens hypothetical protein pr... 28 7.7
>CR541678-1|CAG46479.1| 334|Homo sapiens COPS5 protein.
Length = 334
Score = 186 bits (453), Expect = 1e-47
Identities = 89/105 (84%), Positives = 94/105 (89%)
Frame = +1
Query: 10 DKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANTMI 189
DKKQQQ+ILAAKPW KD H+FK KISALALLKMVMHARSGG LEVMGL+LGKVD TMI
Sbjct: 32 DKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMI 91
Query: 190 VMDSFALPVEGTETRVNAQAQAYEYMTAYIEASKQVGRHENAIGW 324
+MDSFALPVEGTETRVNAQA AYEYM AYIE +KQVGR ENAIGW
Sbjct: 92 IMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGW 136
>BC007272-1|AAH07272.1| 334|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 5 (Arabidopsis)
protein.
Length = 334
Score = 186 bits (453), Expect = 1e-47
Identities = 89/105 (84%), Positives = 94/105 (89%)
Frame = +1
Query: 10 DKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANTMI 189
DKKQQQ+ILAAKPW KD H+FK KISALALLKMVMHARSGG LEVMGL+LGKVD TMI
Sbjct: 32 DKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMI 91
Query: 190 VMDSFALPVEGTETRVNAQAQAYEYMTAYIEASKQVGRHENAIGW 324
+MDSFALPVEGTETRVNAQA AYEYM AYIE +KQVGR ENAIGW
Sbjct: 92 IMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGW 136
>BC001859-1|AAH01859.1| 334|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 5 (Arabidopsis)
protein.
Length = 334
Score = 186 bits (453), Expect = 1e-47
Identities = 89/105 (84%), Positives = 94/105 (89%)
Frame = +1
Query: 10 DKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANTMI 189
DKKQQQ+ILAAKPW KD H+FK KISALALLKMVMHARSGG LEVMGL+LGKVD TMI
Sbjct: 32 DKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMI 91
Query: 190 VMDSFALPVEGTETRVNAQAQAYEYMTAYIEASKQVGRHENAIGW 324
+MDSFALPVEGTETRVNAQA AYEYM AYIE +KQVGR ENAIGW
Sbjct: 92 IMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGW 136
>BC001187-1|AAH01187.1| 334|Homo sapiens COP9 constitutive
photomorphogenic homolog subunit 5 (Arabidopsis)
protein.
Length = 334
Score = 186 bits (453), Expect = 1e-47
Identities = 89/105 (84%), Positives = 94/105 (89%)
Frame = +1
Query: 10 DKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANTMI 189
DKKQQQ+ILAAKPW KD H+FK KISALALLKMVMHARSGG LEVMGL+LGKVD TMI
Sbjct: 32 DKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMI 91
Query: 190 VMDSFALPVEGTETRVNAQAQAYEYMTAYIEASKQVGRHENAIGW 324
+MDSFALPVEGTETRVNAQA AYEYM AYIE +KQVGR ENAIGW
Sbjct: 92 IMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGW 136
>U65928-1|AAB16847.1| 334|Homo sapiens Jun activation domain
binding protein protein.
Length = 334
Score = 184 bits (448), Expect = 6e-47
Identities = 88/105 (83%), Positives = 93/105 (88%)
Frame = +1
Query: 10 DKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANTMI 189
DKKQQQ+ILAAKPW KD H+FK KISALALLKMVMHARSGG LEVMGL+LGKVD TMI
Sbjct: 32 DKKQQQEILAAKPWTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMI 91
Query: 190 VMDSFALPVEGTETRVNAQAQAYEYMTAYIEASKQVGRHENAIGW 324
+MDSFALPVEGTETRVNAQA AYEYM AYIE +KQVG ENAIGW
Sbjct: 92 IMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGHLENAIGW 136
>U70734-1|AAD03468.1| 334|Homo sapiens 38 kDa Mov34 homolog
protein.
Length = 334
Score = 175 bits (425), Expect = 3e-44
Identities = 86/105 (81%), Positives = 91/105 (86%)
Frame = +1
Query: 10 DKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANTMI 189
DKKQQQ+ILAA KD H+FK KISALALLKMVMHARSGG LEVMGL+LGKVD TMI
Sbjct: 32 DKKQQQEILAANLGTKDHHYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMI 91
Query: 190 VMDSFALPVEGTETRVNAQAQAYEYMTAYIEASKQVGRHENAIGW 324
+MDSFALPVEGTETRVNAQA AYEYM AYIE +KQVGR ENAIGW
Sbjct: 92 IMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGW 136
>AB209134-1|BAD92371.1| 276|Homo sapiens COP9 signalosome subunit 5
variant protein.
Length = 276
Score = 154 bits (373), Expect = 7e-38
Identities = 74/87 (85%), Positives = 78/87 (89%)
Frame = +1
Query: 64 HFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNA 243
H+FK KISALALLKMVMHARSGG LEVMGL+LGKVD TMI+MDSFALPVEGTETRVNA
Sbjct: 19 HYFKYCKISALALLKMVMHARSGGNLEVMGLMLGKVDGETMIIMDSFALPVEGTETRVNA 78
Query: 244 QAQAYEYMTAYIEASKQVGRHENAIGW 324
QA AYEYM AYIE +KQVGR ENAIGW
Sbjct: 79 QAAAYEYMAAYIENAKQVGRLENAIGW 105
>U86782-1|AAC51866.1| 310|Homo sapiens 26S proteasome-associated
pad1 homolog protein.
Length = 310
Score = 68.5 bits (160), Expect = 4e-12
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +1
Query: 73 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 249
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 29 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVD 88
Query: 250 QAYEYMTAYIEASKQVGRHENAIGW 324
++ ++ KQ GR E +GW
Sbjct: 89 PVFQ--AKMLDMLKQTGRPEMVVGW 111
>BC066336-1|AAH66336.1| 310|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 14 protein.
Length = 310
Score = 68.5 bits (160), Expect = 4e-12
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +1
Query: 73 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 249
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 29 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVD 88
Query: 250 QAYEYMTAYIEASKQVGRHENAIGW 324
++ ++ KQ GR E +GW
Sbjct: 89 PVFQ--AKMLDMLKQTGRPEMVVGW 111
>AC009299-2|AAX88940.1| 154|Homo sapiens unknown protein.
Length = 154
Score = 68.5 bits (160), Expect = 4e-12
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +1
Query: 73 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 249
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 29 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVD 88
Query: 250 QAYEYMTAYIEASKQVGRHENAIGW 324
++ ++ KQ GR E +GW
Sbjct: 89 PVFQ--AKMLDMLKQTGRPEMVVGW 111
>D50063-1|BAA08780.1| 324|Homo sapiens proteasome subunit p40 /
Mov34 protein protein.
Length = 324
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +1
Query: 79 IKISALALLKMVMH----ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQ 246
+ + L LL +V H + G V+G+LLG + V +SFA+P + + +
Sbjct: 9 VVVHPLVLLSVVDHFNRIVKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 247 AQAYEYMTAYIEASKQVGRHENAIGW 324
++Y+ K+V E +GW
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGW 94
>BC012606-1|AAH12606.1| 324|Homo sapiens proteasome (prosome,
macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog)
protein.
Length = 324
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +1
Query: 79 IKISALALLKMVMH----ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQ 246
+ + L LL +V H + G V+G+LLG + V +SFA+P + + +
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 247 AQAYEYMTAYIEASKQVGRHENAIGW 324
++Y+ K+V E +GW
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGW 94
>BC000338-1|AAH00338.1| 326|Homo sapiens PSMD7 protein protein.
Length = 326
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +1
Query: 79 IKISALALLKMVMH----ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQ 246
+ + L LL +V H + G V+G+LLG + V +SFA+P + + +
Sbjct: 9 VVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVW 68
Query: 247 AQAYEYMTAYIEASKQVGRHENAIGW 324
++Y+ K+V E +GW
Sbjct: 69 FLDHDYLENMYGMFKKVNARERIVGW 94
>BX470111-2|CAO03574.1| 226|Homo sapiens BRCA1/BRCA2-containing
complex, subunit 3 protein.
Length = 226
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +1
Query: 79 IKISALALLKMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAY 258
+ + + A L + HA S EVMGL +G+VDA ++ + S + + + +
Sbjct: 12 VHLESDAFLVCLNHALSTEKEEVMGLCIGEVDAVRIVHIHSVIILRRSDKRKDRVEISPE 71
Query: 259 EYMTAYIEA---SKQVGRHENAIGW 324
+ A EA ++ GR +GW
Sbjct: 72 QLSAASTEAERLAELTGRPMRVVGW 96
>AK131343-1|BAD18499.1| 133|Homo sapiens protein ( Homo sapiens
cDNA FLJ16361 fis, clone THYMU2030462. ).
Length = 133
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 321 TNGILMTAHLF*CFNICCHIFVSLSLCIDTSFSTFYRESKRIHNNHSVC 175
T+ + + H+ C I HI+++ I T+ +R HN+HS C
Sbjct: 20 TSFLALWWHVCVCICIYTHIYINTQTHIYTNTRIHFRPQFLAHNSHSPC 68
>BX538271-1|CAD98078.1| 283|Homo sapiens hypothetical protein
protein.
Length = 283
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 282 FNICCHIFVSLSLCIDTSFSTFYRESKRIHNNHSVCVNFT 163
FN+ + +SL+LC D ++ ++HN + +N T
Sbjct: 224 FNLTGVVLISLALCADAVIGNVQEKAMKLHNASNSEMNIT 263
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,457,251
Number of Sequences: 237096
Number of extensions: 988294
Number of successful extensions: 2062
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2060
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1685725862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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