Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K06
         (254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    25   1.2  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    24   2.8  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    23   6.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    23   8.5  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    23   8.5  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    23   8.5  

>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 248 AGAASGVGIVDCGVVAWPGRRVDPAPGPGL-DLDGKP 141
           +G AS +G  +C +V  P     PA  PG+  + G P
Sbjct: 543 SGVASLMGTTECAIVDAPEESKAPAGPPGMGGMGGMP 579


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 254 HLAGAASGVGIVDCGVVAWPGRRVDPAPGPGLD 156
           +L GA  G G+ D G+ A  G    P P P  D
Sbjct: 275 NLGGAGFGAGLGDAGLGAGLGGAASP-PAPAQD 306


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 173 PGPGLDLDGKPLQSH 129
           P P  D+DG P QSH
Sbjct: 267 PEPLTDIDGLPSQSH 281


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 187  LRPGQATTPQSTMPTPLAAP 246
            +RP  A  PQ + PTP   P
Sbjct: 1692 VRPQSAAPPQMSAPTPPPPP 1711


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 206 VAWPGRRVDPAPGPGLDLDGKPLQSHPD 123
           +AWP   + P     LDL    LQ +P+
Sbjct: 888 IAWPDLEMYPCSEEALDLINGFLQPNPE 915


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 193 PGQATTPQSTMPTPLAAPA 249
           P Q +T   ++P P+AAPA
Sbjct: 174 PVQYSTQPVSLPQPIAAPA 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,603
Number of Sequences: 5004
Number of extensions: 6345
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)