Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0022_K06
(254 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0549 - 4038699-4038753,4039225-4039514,4039673-4039970,404... 28 1.2
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 27 2.1
04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631... 27 2.8
12_01_0424 - 3346402-3346875 26 3.6
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 26 4.8
11_06_0632 + 25674807-25675477,25676472-25677861,25677948-256780... 26 4.8
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 26 4.8
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 26 4.8
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237... 26 4.8
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 25 6.4
12_01_0534 + 4206360-4206776 25 8.4
06_03_0854 + 25400855-25403741,25406174-25407708 25 8.4
02_05_0440 - 29035974-29036356,29037977-29038133,29038260-290388... 25 8.4
>02_01_0549 -
4038699-4038753,4039225-4039514,4039673-4039970,
4040779-4040849,4040966-4041079,4041166-4041240,
4041347-4041405,4041870-4041912
Length = 334
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 245 GAASGVGIVDCGVVAW 198
G A+G+ IV CG++AW
Sbjct: 147 GTANGMAIVPCGLIAW 162
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 193 PGQATTPQSTMPTPLAAPAR 252
P +A+ P ST P PL APA+
Sbjct: 43 PPRASIPVSTSPAPLPAPAK 62
>04_04_0168 +
23259459-23260001,23260883-23262780,23263000-23263150,
23263851-23264669
Length = 1136
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -1
Query: 230 VGIVDCGVVAWPGRRVDPAPGPGLDLDG 147
VG+VDC V G R P G DLDG
Sbjct: 800 VGMVDCLVFPQRGERPHPNECSGGDLDG 827
>12_01_0424 - 3346402-3346875
Length = 157
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 227 GIVDCGVVAWPGRRVDPAPGPGLD 156
G+ + GV WP D AP G+D
Sbjct: 42 GVPNAGVDGWPKAPADVAPNAGVD 65
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 248 AGAASGVGIVD-CGVVAWPGRRVDPA 174
AGAASG G +D V A+P R PA
Sbjct: 477 AGAASGTGGLDPAAVAAFPTRAFSPA 502
>11_06_0632 +
25674807-25675477,25676472-25677861,25677948-25678083,
25678185-25678282,25678470-25678535,25678699-25678827,
25679570-25679746,25680576-25680614
Length = 901
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = -1
Query: 203 AWPGRRVDPAPGPGLD-LDGKP 141
AWP R PAP P D L G P
Sbjct: 36 AWPNPRSTPAPAPSYDGLFGAP 57
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 251 LAGAASGVGIVDCGV 207
+AGA G+GIV CGV
Sbjct: 481 VAGALLGIGIVSCGV 495
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 251 LAGAASGVGIVDCGV 207
+AGA G+GIV CGV
Sbjct: 456 VAGALLGIGIVSCGV 470
>04_04_0910 -
29321128-29321276,29321977-29322508,29323301-29323706,
29323933-29324028,29324563-29324645,29326620-29326732,
29327156-29327315
Length = 512
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -1
Query: 239 ASGVGIVDCGVVAWPGRR-VDPAP 171
A G G V G A PGRR VDP P
Sbjct: 279 ADGAGDVPGGDAACPGRRTVDPTP 302
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 251 LAGAASGVGIVDCGV 207
+AGA G+GIV CGV
Sbjct: 452 VAGALLGIGIVTCGV 466
>12_01_0534 + 4206360-4206776
Length = 138
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 218 DCGVVAWPGRRVDPAP 171
DCG W GRR+ P P
Sbjct: 42 DCGSGRWGGRRLRPRP 57
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 250 SPVPPAASASWIAEW 206
SPVPP +AS +A W
Sbjct: 768 SPVPPTLAASGVAAW 782
>02_05_0440 -
29035974-29036356,29037977-29038133,29038260-29038824,
29038866-29039191
Length = 476
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 248 AGAASGVGIVDCGVVAWPGRRVDP 177
AG V VDC V PGRR +P
Sbjct: 201 AGGEPTVSSVDCLVRISPGRRTEP 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,421,217
Number of Sequences: 37544
Number of extensions: 76884
Number of successful extensions: 327
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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