Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K06
         (254 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067942-11|AAG45576.2|  406|Caenorhabditis elegans Downstream o...    27   1.8  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    26   4.3  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    25   5.6  

>AF067942-11|AAG45576.2|  406|Caenorhabditis elegans Downstream of
           daf-16 (regulatedby daf-16) protein 19 protein.
          Length = 406

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 184 TLRPGQATTPQSTMPTP 234
           T +PGQ T PQ T+P P
Sbjct: 355 TSKPGQPTVPQPTLPGP 371


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 196 GQATTPQSTMPTPLAAPA 249
           G AT PQST PTP+   A
Sbjct: 306 GAATAPQSTNPTPVEVRA 323


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 184 TLRPGQATTPQSTMPTPLAAPA 249
           T+ PG   TP +T+P P  +P+
Sbjct: 130 TIAPGAPETPGATVPPPTMSPS 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,683,915
Number of Sequences: 27780
Number of extensions: 44938
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)