Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K06
         (254 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    19   7.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   9.6  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    19   9.6  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 1.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 193 PGQATTPQSTMPTPLAA 243
           PG+   P  T PTP +A
Sbjct: 287 PGEVDLPPETQPTPPSA 303


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 218  DCGVVAWPGRRVDPAPG 168
            + G +A P R++ P PG
Sbjct: 1642 ELGYIAPPNRKLPPVPG 1658


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 130  IPTSPPAQSRCGSL 89
            +P+ PP   RC +L
Sbjct: 1110 VPSIPPEDVRCAAL 1123


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 130  IPTSPPAQSRCGSL 89
            +P+ PP   RC +L
Sbjct: 1106 VPSIPPEDVRCAAL 1119


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 19.4 bits (38), Expect = 7.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 170 GPGLDLDGKPL 138
           G  + LDGKPL
Sbjct: 963 GGAISLDGKPL 973


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -3

Query: 54  ALRRQRVPHHVLHPTLVP 1
           A++    PHH  HP   P
Sbjct: 456 AIQIGHTPHHHPHPPETP 473


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP
          synthase 16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 56 TRSAGSGYLTMSCIRP 9
          T  +G+G   MS +RP
Sbjct: 33 TAKSGTGIAAMSVMRP 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,985
Number of Sequences: 438
Number of extensions: 533
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4511484
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)