Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K05
         (362 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    28   0.51 
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    26   2.1  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   2.7  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   3.6  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    24   6.3  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    24   8.3  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    24   8.3  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    24   8.3  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    24   8.3  

>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 27.9 bits (59), Expect = 0.51
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -2

Query: 259 KRKWSSISCCWVSFDIPVSG*KVPLSSPSSPERVLETLSSI--SLYWASVRQGLKGYPSM 86
           KR  S+    W+SF   ++     LSS ++P  +L + S I  S YWA   +     P  
Sbjct: 17  KRLRSTTKSTWLSFLKSIATFSGDLSSLTAPSFILSSTSLIEYSAYWAEHPELFISLPRG 76

Query: 85  ERPQRTRVETT 53
           E P   ++  T
Sbjct: 77  ETPLERQLLVT 87


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 99  PFNPCLTEAQYKEMED--KVSSTLSGLEGELKGTFYPLTGMSKET 227
           P  P L   Q +  +D  K +S +     E+K  FY LTG+  +T
Sbjct: 41  PEAPLLDNEQRQSAQDFIKDNSEIVVSTSEIKNLFYELTGLDPDT 85


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -2

Query: 271 SPSLKRKWSSISCCWVSFDIPVSG*KVPLSSPSSPERVLETLSSISLYWASVRQGLKGYP 92
           SP  KR   +I    V FD+P    ++  S+ SSPE+ L T +S S + +  ++ L   P
Sbjct: 67  SPLSKRN-PTIKQNRVRFDLPDD--ELSRSNVSSPEKTLLTSASTSTFDSLKKELLPELP 123

Query: 91  SM 86
           S+
Sbjct: 124 SL 125


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 30  NLDPAGEFVVSTRVRCGRSMEGYPFNPCLTEAQYKEMEDKV 152
           N+D A EF++ T      S++G   N C+ +  YK   DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 169 PERVLETLSSISLYWASVRQGLKGYPSME 83
           P+ VLETL +I +    + +G  G PS +
Sbjct: 394 PKEVLETLYTIRIRIKPIEEGGTGVPSAQ 422


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 306 WPTGRGIYHNENKTF 350
           +P GRG+Y N + TF
Sbjct: 243 YPDGRGLYQNPDGTF 257


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +3

Query: 9   HEVETLGNLDPAGEFVVSTRVRC-GRSMEGYPFNP 110
           H +  L +L   G F VST + C  R     P+ P
Sbjct: 166 HSLSQLTDLLTDGSFYVSTNISCFSRFQSEQPYGP 200


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 128 VQGDGR*SLQHPLWTRGR 181
           VQ DG     HPLW+R R
Sbjct: 463 VQSDGSAPKLHPLWSRFR 480


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 193 VPLSSPSSPERVLETLSSI--SLYWASVRQGLKG 98
           VPL +PS+ +R +E L+S+  S  +   R G  G
Sbjct: 152 VPLVAPSTTDRRMELLASVADSFIYVVSRMGSTG 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,126,057
Number of Sequences: 5004
Number of extensions: 21091
Number of successful extensions: 67
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)