Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K05
         (362 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0451 - 17863381-17864808                                         27   4.5  
09_04_0387 - 17197626-17197785,17198095-17198213,17198751-171988...    27   6.0  
10_08_0298 - 16603417-16603775,16604015-16604203,16604420-166045...    26   7.9  
07_03_0565 - 19561078-19561425,19562253-19563746                       26   7.9  
03_02_0610 + 9834083-9834368,9834495-9834556,9834695-9834787,983...    26   7.9  
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397...    26   7.9  

>11_04_0451 - 17863381-17864808
          Length = 475

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -2

Query: 295 ALAAWRKRSPSLKRKWSSISCCWVSFDIPVSG*KVPLSSPSSPERVLETLSS 140
           AL A    SP+ +R W SIS    +    +S    P   PS+P R+L  L+S
Sbjct: 28  ALPAAAAASPAFRRHWPSISASLAALSASLSH---PAFPPSAP-RLLAPLAS 75


>09_04_0387 -
           17197626-17197785,17198095-17198213,17198751-17198857,
           17199000-17199078,17199210-17199551,17199695-17199847,
           17199949-17200267,17200457-17200680
          Length = 500

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 69  VRCGRSMEGYPFNPCLTEAQYKEMEDKVSSTLSGLEGELKGTFYPLTGMS 218
           +R  + ++G P  P    A   ++E  V STL+  +G +  TF+ +  +S
Sbjct: 135 LRLRKLVQG-PLGPDALRALVPDVEAAVRSTLASWDGNVSSTFHAMKRLS 183


>10_08_0298 -
           16603417-16603775,16604015-16604203,16604420-16604540,
           16604671-16604880
          Length = 292

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = +3

Query: 42  AGEFVVSTR---VRCGRSMEGYPFNPCLTEAQYKEMEDKVSST---LSGLEGELKGTFYP 203
           AGE  +  R   VRC    +   F   +   QY+ MEDK S     LS  + +++   + 
Sbjct: 51  AGELTLRLRQLDVRCETKTKDNVFVTVVASIQYRAMEDKASDAYYKLSNPKSQIQSYVFD 110

Query: 204 LTGMSKETQQQLIDDHFLFK 263
           +   S    +  +DD FL K
Sbjct: 111 VIRASIPKLE--LDDAFLQK 128


>07_03_0565 - 19561078-19561425,19562253-19563746
          Length = 613

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = -2

Query: 298 HALAAW---RKRSPSLKRKWSSISCCWVSFDIPVSG*KVPLSSPSSP 167
           H LAAW   R+R+P+L      +   ++  D       VPL S ++P
Sbjct: 146 HRLAAWAKLRRRAPALSAALRRVQDFYLEVDFHFESSVVPLLSRAAP 192


>03_02_0610 +
           9834083-9834368,9834495-9834556,9834695-9834787,
           9835689-9835805,9835972-9836055,9836198-9836293,
           9836368-9836445,9836548-9836637,9836733-9836800,
           9836940-9837021,9838203-9838289
          Length = 380

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 271 SPSLKRKWSSISCCWVSFDIPVSG*KVPLSSPSSPERV 158
           SP    + SSI CC  + D   S   +  +SP  P+ V
Sbjct: 25  SPRRAARASSIKCCTAASDAGASSASISSASPRRPDVV 62


>01_01_0542 +
           3975500-3975546,3976273-3976370,3976694-3976830,
           3977518-3977871,3977953-3978041,3978502-3978589,
           3978659-3978734,3978858-3978907,3979032-3979340,
           3979803-3979982,3980086-3980325,3980471-3980582,
           3980931-3981040,3981162-3981311,3981777-3981932,
           3982289-3982405,3982759-3982839,3983338-3983478
          Length = 844

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 36  DPAGEFVVSTRVRCGRSMEGYPF--NPCLTEAQYKEMEDKVSSTLSGL 173
           DP+GE+VVS      +S+E +    N  +T A +  +   ++S+ SGL
Sbjct: 783 DPSGEYVVSVSEDTVKSLELWDMSENRTMTLAAHDSLITALASSSSGL 830


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,066,012
Number of Sequences: 37544
Number of extensions: 161634
Number of successful extensions: 507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)