Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K03
         (102 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    23   7.1  
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    22   9.4  

>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 532

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 79 KHSYLVDILYSRQFFFYFIS 20
          KH  L+ ++ S   FFYF S
Sbjct: 29 KHGILLILVLSTVIFFYFFS 48


>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 488

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 61  QPDKNVWVQL 90
           QPD N+W+QL
Sbjct: 365 QPDHNLWMQL 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,956
Number of Sequences: 5004
Number of extensions: 4523
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 15
effective length of database: 2,287,418
effective search space used: 41173524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)