Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K03
         (102 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0525 + 20023013-20023063,20023129-20023221,20023726-200238...    26   4.7  

>12_02_0525 +
           20023013-20023063,20023129-20023221,20023726-20023802,
           20025072-20025138,20025419-20025512,20027116-20027513
          Length = 259

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 87  LYPNILIWLIFYTVDSFSFTSFLV 16
           L+P I+I  ++ TV + + TSF+V
Sbjct: 66  LHPEIIITAVYITVGNHAVTSFIV 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,340
Number of Sequences: 37544
Number of extensions: 19792
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 14,793,348
effective HSP length: 15
effective length of database: 14,230,188
effective search space used: 256143384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)