Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K03
         (102 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93381-6|CAB07609.1|  724|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z83218-8|CAB05693.1|  724|Caenorhabditis elegans Hypothetical pr...    26   4.1  
Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm rece...    25   7.2  
AF125952-10|AAD14693.2|  352|Caenorhabditis elegans Seven tm rec...    25   9.5  
AC006722-16|AAK68409.2|  308|Caenorhabditis elegans Hypothetical...    25   9.5  

>Z93381-6|CAB07609.1|  724|Caenorhabditis elegans Hypothetical
           protein C31A11.1 protein.
          Length = 724

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 78  NILIWLIFYTVDSFSFTSFLV*IYLF 1
           N LI   FY+VD+F   S LV  YLF
Sbjct: 301 NHLILSAFYSVDTFFLLSGLVVSYLF 326


>Z83218-8|CAB05693.1|  724|Caenorhabditis elegans Hypothetical
           protein C31A11.1 protein.
          Length = 724

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 78  NILIWLIFYTVDSFSFTSFLV*IYLF 1
           N LI   FY+VD+F   S LV  YLF
Sbjct: 301 NHLILSAFYSVDTFFLLSGLVVSYLF 326


>Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical
           protein C31A11.5 protein.
          Length = 705

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 78  NILIWLIFYTVDSFSFTSFLV*IYLF 1
           N L+   FY+VD+F   S LV  YLF
Sbjct: 301 NHLVMNAFYSVDTFFLLSGLVVSYLF 326


>AF068713-2|AAC17805.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 260 protein.
          Length = 347

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 86  CTQTFLSG*YSIQSTVFLLLHFWYRFI 6
           C+  F  G Y I   + L LHF YRF+
Sbjct: 87  CSVLFYGGFYGITLAI-LALHFIYRFL 112


>AF125952-10|AAD14693.2|  352|Caenorhabditis elegans Seven tm
           receptor protein 257 protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 98  KYYNCTQTFLSG*YSIQSTVFLLLHFWYRFI 6
           KY  CT   L   +   S   L LHF YR++
Sbjct: 83  KYVACTLNLLFIGFFGMSVAILALHFIYRYL 113


>AC006722-16|AAK68409.2|  308|Caenorhabditis elegans Hypothetical
           protein Y19D10A.1 protein.
          Length = 308

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 98  KYYNCTQTFLSG*YSIQSTVFLLLHFWYRFI 6
           KY  CT   L   +   S   L LHF YR++
Sbjct: 65  KYVACTLNLLFIGFFGMSVAILALHFIYRYL 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,359
Number of Sequences: 27780
Number of extensions: 23572
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 12,740,198
effective HSP length: 15
effective length of database: 12,323,498
effective search space used: 221822964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)