Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0022_K02
         (227 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0MRF6 Cluster: Putative ATP synthase F0F1 gamma subuni...    31   6.6  

>UniRef50_Q0MRF6 Cluster: Putative ATP synthase F0F1 gamma subunit;
           n=1; Pseudomonas veronii|Rep: Putative ATP synthase F0F1
           gamma subunit - Pseudomonas veronii
          Length = 304

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -1

Query: 215 NTYTRFVFLSVHLFVSLFRLSSEN 144
           NT T   F+  HLFVSLFR S+E+
Sbjct: 219 NTQTLRAFIHEHLFVSLFRASAES 242


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,742,264
Number of Sequences: 1657284
Number of extensions: 3236793
Number of successful extensions: 7285
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7282
length of database: 575,637,011
effective HSP length: 54
effective length of database: 486,143,675
effective search space used: 10209017175
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)